Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3658 104 2e-17 >seq3658 Length=1447888 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | || | ||| || ||| ||| || || |||||||| || || Sbjct 43707 CCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAA 43766 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| |||| || | |||||| ||||| || || |||| ||| ||||| | || Sbjct 43767 AGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 43826 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| ||||| ||| ||| | | | || || ||||||||| Sbjct 43827 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACC 43886 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 43887 TCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380920561375410