Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3649 141 2e-28 seq3663 102 2e-16 >seq3649 Length=974952 Score = 141 bits (156), Expect = 2e-28 Identities = 229/327 (70%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || ||||||||||| |||| ||||| || ||| ||||||| Sbjct 67581 CCTGGCATGAGTCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAACGATCCACTGAAGAAG 67522 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || || || || || ||||| ||| |||| | || |||| || || |||||||| ||| Sbjct 67521 ATTCCTTCGACAGCGGCGAAGGCGATGAGACGTTCGGCGAACGACGCCTTCTTGTCCGAG 67462 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG-TCTC---TATGGC 48366 ||||| | |||||||| ||||||||||||||| || ||| ||| ||||| Sbjct 67461 ATCCACTTCATAGCCCAGTCGGCCTTCTTCTTGATGAAT----TCGAACTCGAAAATGGC 67406 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||| || | || ||| | || || ||||| || ||||| | ||| Sbjct 67405 GTTGAACAGAGTAAGGCGCTCCTTCTCATCACGAATGTAGGTTTCGATGAGCTTCGAGTA 67346 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||| ||||| ||||||||| | ||||| | Sbjct 67345 CATCTCCGAGTGAATGTTCTCGATGGCGATTTGGAATCCGTAGAAGAATCGAGCCTCCGA 67286 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTC 48513 ||||| ||||| | ||||| | ||| Sbjct 67285 CACCTTGACTTCGTTTGAGAAGCGCTC 67259 >seq3663 Length=2118579 Score = 102 bits (112), Expect = 2e-16 Identities = 331/507 (65%), Gaps = 29/507 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| || | || |||| | ||| ||||| | |||||||| || ||||| Sbjct 1960517 ACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTCCAGTCTTA 1960458 Query 212613 AGGCCCTTGCC-CCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671 ||||| |||| ||| |||| | |||||| | |||| | |||| || | | Sbjct 1960457 AGGCC-TTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTG----CAGCGTAGCTT---G 1960406 Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731 || | ||| | || | || || || ||| || || ||||||| | | Sbjct 1960405 GTT-------TAGCCATG-TGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACG 1960354 Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 ||||| ||||| || ||||| || | || |||| |||||||| || ||| || Sbjct 1960353 ATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTC 1960294 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTG 212851 || | ||| |||||| | ||||||||||| | || || ||| ||| | || Sbjct 1960293 CTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTGT---TGGCTA--TG 1960239 Query 212852 CAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 ||||| ||| || || |||| | || || ||| ||||| || || Sbjct 1960238 -AGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATG 1960180 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 || ||||||||||||||||| || || || || | | || | |||||| ||||| Sbjct 1960179 TGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTA 1960120 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||| || ||| ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 1960119 TGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGC 1960060 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTG 213052 || ||| |||||||| | | |||||| Sbjct 1960059 CATCAGAAGACTGTTGCGGATTCCGTG 1960033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931490065932800