Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3649 96.9 6e-15 seq3635 89.7 1e-12 >seq3649 Length=974952 Score = 96.9 bits (106), Expect = 6e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 25815 CATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGG 25874 |||||||| |||||| ||||| |||||||||||| | ||| || |||| | Sbjct 67426 CATCAAGAAGAAGGCCGACTGGGCTATGAAGTGGATCTCGGACAAGAAGGCGTCGTTCGC 67485 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 ||| || || | ||||| || ||||| || || ||||| ||||| || ||||| || | Sbjct 67486 CGAACGTCTCATCGCCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCGTTCGCCTC 67545 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||| || | |||| |||||| || || ||||| ||||||| Sbjct 67546 AATCTTCTGGCTCAAGAAG-CGAGGACTCATGCCAGGATTGACACACTCCAATGAGCTCA 67604 Query 25994 TC 25995 || Sbjct 67605 TC 67606 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGC 26211 ||||||||| | || ||| |||||||| |||| || ||||| || |||| ||| Sbjct 67810 GGCATGAACTGTCGTCTGATGTCTCAATACATCGAGTTCGTCGCCGATCACTTGCT-TGC 67868 Query 26212 C-AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACAT 26270 | || ||| || || || |||| | | || || |||||||| ||||| ||||| Sbjct 67869 GGAACTCGGATGCGACAAGCTGTACAATGTGAAGAATCCATTCGACTTCATGGAGAACAT 67928 Query 26271 ATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| | || || ||||||||||||||||| ||| | ||| ||| ||||| Sbjct 67929 CTCGATCGATGGAAAGACCAACTTCTTTGAGAAGCGTGTCTCCGAGTATCA 67979 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGC 26211 ||||||||| | || ||| |||||||| |||| || ||||| || |||| ||| Sbjct 92701 GGCATGAACTGTCGTCTGATGTCTCAATACATCGAGTTCGTCGCCGATCACTTGCT-TGC 92643 Query 26212 C-AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACAT 26270 |||| ||| || || || |||| | | || || |||||||| ||||| ||||| Sbjct 92642 GGAGCTCGGATGCGACAAGCTGTACAATGTGAAGAATCCATTCGACTTCATGGAGAACAT 92583 Query 26271 ATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| | || || |||||||||||||| || ||| | ||| ||| ||||| Sbjct 92582 CTCGATAGATGGAAAGACCAACTTCTTCGAGAAGCGTGTCTCCGAGTATCA 92532 >seq3635 Length=855266 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC 26235 |||||||| |||| || ||||| || || || |||||||| ||| | ||||||| Sbjct 582955 CAATACATCAAGTACGTCGCCGATCACTTGTTGGAGGAGCTGGGATTCGAGAAACTCTAC 582896 Query 26236 AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTC 26295 || ||||| || || |||||||||||||| ||| | || ||||||||||||||| Sbjct 582895 CACACAATCAACCCATTTGATTTTATGGAAAACATCTCGATCGATGGGAAGACCAACTTC 582836 Query 26296 TTTGAAAAGAGGGTCGGCGACTATCAA 26322 || || ||| | || || |||||| Sbjct 582835 TTCGAGAAGCGTGTGTCAGAGTATCAA 582809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928802189244800