Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq3587 165 2e-36 >seq3587 Length=342905 Score = 165 bits (182), Expect = 2e-36 Identities = 173/225 (77%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 44138 ATGATAATCATTATCA-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTACGGGGCGGCG 44196 |||||||||||||||| ||| |||||||||||||| |||||| | |||||||||||||| Sbjct 27393 ATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGGGGCGGCG 27334 Query 44197 TCCGCGCAGATTCTCGCTATTTATGAAAATTTTCTGGTTTATGCCATTTCCGTTCTTCTT 44256 || ||| | || ||||||||||||||||||||| |||||| | | |||||||||||||| Sbjct 27333 ACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTTCTTCTT 27274 Query 44257 CTTGTTTACTCATTGTTTTTGTTAAAAACGTCCTCTCTCCAGAAAGGAAATGCTGAGCAA 44316 | | | ||| | ||||||| || |||| ||||| | |||||||| | | Sbjct 27273 CGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAAAAAGGAAACGACAGGTGC 27214 Query 44317 GGAAAACG-GAAGTTTACCGTTGATTGTTTCCTTTCTCTGTTTTT 44360 |||| || | ||| | | | ||||||||||||||||||| Sbjct 27213 TGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTT 27169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141872216761980