Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq3587 158 4e-34 >seq3587 Length=342905 Score = 158 bits (174), Expect = 4e-34 Identities = 143/179 (80%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 45120 GATGTGTAAGTGATAATTATTATCG-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTAC 45178 ||| |||| ||||||| |||||| ||| |||||||||||||| |||||| | ||||| Sbjct 27402 GATATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTAC 27343 Query 45179 GGGGCGGCGTCCGCGCAGATTCTCGCTATTTATGAAAATTTTCTGGTTTATGCCATTTCC 45238 ||||||||| || ||| | || ||||||||||||||||||||| |||||| | | ||||| Sbjct 27342 GGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCC 27283 Query 45239 GTTCTTCTTCTTGTTTACTCATTGTTTTTGTTAAAAACGTCCTCTCTCCAGAAAGGAAA 45297 |||||||||| | | ||| | ||||||| || |||| ||||| | |||||||| Sbjct 27282 GTTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAAAAAGGAAA 27224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145043278557120