Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq3587 637 1e-178 >seq3587 Length=342905 Score = 637 bits (706), Expect = 1e-178 Identities = 356/358 (99%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 46733 TGTATTGTCTGAAGTTGTTTTTACGTTAAGTTGATGCAGATCAATTAATACGATACCTGC 46792 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 27510 TGTATTGTCTGAAGTTGCTTTTACGTTAAGTTGATGCAGATCAATTAATACGATACCTGC 27451 Query 46793 GTCATAATTGATTATTTGACGTGGTTTGATGGCCTCCACGCACGTTGTGATATGTAGATG 46852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27450 GTCATAATTGATTATTTGACGTGGTTTGATGGCCTCCACGCACGTTGTGATATGTAGATG 27391 Query 46853 ATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGGGGCGGCGACC 46912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27390 ATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGGGGCGGCGACC 27331 Query 46913 TCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTTCTTCTTCGT 46972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27330 TCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTTCTTCTTCGT 27271 Query 46973 CATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACGACAGGTGCTGA 47032 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 27270 CATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAAAAAGGAAACGACAGGTGCTGA 27211 Query 47033 AAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGAACA 47090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27210 AAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGAACA 27153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150559838128080