Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3664 95.1 1e-14 >seq3664 Length=2010644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139238 AATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGA 139297 ||||| ||| || || || |||| | || ||||| || ||||||| | | |||| Sbjct 1885834 AATTCCTCTAGCGATTTCAGTGAGTCTCTGTGGTCCATGGTAAACTGCATACATTGCAGA 1885893 Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 |||||| || || || ||||| || || ||||||||||| ||||||||||| | | ||| Sbjct 1885894 CATATTGGCAAGAAGAGCTTGAGCAGTACAGATGTTACTTGTTGCTTTGTCACGACGAAT 1885953 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||| || || | |||||| || || || | | ||| |||| || Sbjct 1885954 ATGTTGTTCACGAGTTTGGAGAGCCAAACGGAGAGCACGATTTCC 1885998 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || || || ||||| || ||||| ||||||||||||||||| || || Sbjct 1884549 ACTCCAATTGGTCCGACACCTGGACCACCTCCTCCGTGTGGAATACAGAATGTTTTGTGA 1884608 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| | ||| | || || ||| ||||| | ||| | || || || ||| Sbjct 1884609 AGATTCAAATGTGACACGTCACTACCGTAGTCTCCTGGACGACACAATCCAACTTGAGCA 1884668 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| || || || || | || ||||| | | ||| | Sbjct 1884669 TTCATGTTGGCTCCATCCAAATAAACTTGTCCTCCGTGCTCGTGAACTTTATCACAGACA 1884728 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | | ||| | ||| || || |||||||| |||||||| || | ||||||| Sbjct 1884729 TCGCGAATGGAAGATTCGAAAACTCCATGAGTAGATGGATAGGTGACCATAATA 1884782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578971838448400