Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq265 129 8e-25 seq3544 123 3e-23 seq989 98.7 1e-15 >seq265 Length=4024 Score = 129 bits (142), Expect = 8e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 47968 TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTAT 48027 ||||| | | |||| |||||||| || ||||| ||| |||| ||| |||| ||| Sbjct 3731 TCACCTCTACGTGGACTCTCATGATTGAAGAGAATTCCATTACATGCAAACATGTTGTAC 3672 Query 48028 GATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAA 48087 | ||||||||||| || ||||| || ||||| | || |||||| | || ||||| Sbjct 3671 GCCTCACGATAGTTAACCACAATCCAATATCCATACATCTTGGCAACAGCGTATGGAGAT 3612 Query 48088 CGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCA 48147 | ||||||||| || || |||| | |||||| |||||||||| || ||||| | |||| Sbjct 3611 CTTGGATAGAATGGAGTCTTCTCACTTTGTGGAATCTCTTGCACTTTTCCATACAATTCA 3552 Query 48148 CTGGTGGATGCTTGATAGATACGAAC 48173 || || |||||||||| ||| || Sbjct 3551 GAAGTCGACGCTTGATAGAAACGGAC 3526 >seq3544 Length=228915 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 47968 TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTAT 48027 ||||| | | |||| |||||||| || ||||| ||| |||| ||| |||| ||| Sbjct 3976 TCACCTCTACGTGGACTCTCATGATTGAAGAGAATTCCATTACATGCAAACATGTTGTAC 4035 Query 48028 GATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAA 48087 | ||||||||||| || ||||| || ||||| | || |||||| | || ||||| Sbjct 4036 GCCTCACGATAGTTAACCACAATCCAATATCCATACATCTTGGCAACAGCGTATGGAGAT 4095 Query 48088 CGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCA 48147 | ||||||||| || || |||| | |||||| ||||||| || || ||||| | |||| Sbjct 4096 CTTGGATAGAATGGAGTCTTCTCACTTTGTGGAATCTCTTGTACTTTTCCATACAATTCA 4155 Query 48148 CTGGTGGATGCTTGATAGATACGAAC 48173 || || |||||||||| ||| || Sbjct 4156 GAAGTCGACGCTTGATAGAAACGGAC 4181 >seq989 Length=5214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 |||||| ||||||| ||||||||||||| ||| | |||||||||||||||||||||||| Sbjct 108 TGGAGACTAACGGAGTCGAACCGTTGACCTCCCGCGTGCAAAGCAGGCGCTCTACCAACT 167 Query 53801 GAGCTAATTCCCCA 53814 |||||| |||||| Sbjct 168 AAGCTAAGTCCCCA 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665463870444400