Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3663 165 1e-35 seq3666 107 2e-18 >seq3663 Length=2118579 Score = 165 bits (182), Expect = 1e-35 Identities = 690/1083 (64%), Gaps = 77/1083 (7%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||||||| ||||| || ||||| |||||| || ||| ||||| | Sbjct 1959409 GAGACTGGACTTCCATACATCACCTACAAAGATGCTGCCAATCGCAAGTCCAACCAGCAA 1959468 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | ||||| |||||| |||| || || ||||| ||||| | |||||| ||| | Sbjct 1959469 AATCTCGGAACCATCAAGTGCTCCAACCTCTGCACTGAAATCATGGAGTACTCAGCTCCA 1959528 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT-ATGTCAATGAAGA 76083 ||||||| ||||| |||||| | || || ||||| || | || | |||| | ||| Sbjct 1959529 GATGAGATCGCTGTCTGCAATCTTGCTTCGATCGCT-TTGAATCGTTACGTCACTCCAGA 1959587 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 || | || |||| | || ||| ||| |||| || | | || || ||||| Sbjct 1959588 GAAG---AAGTTCGATTTCAAGAAGCTTGCCGAAGTCACCAAAGTCATAACGAAGAATCT 1959644 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCG 76203 ||| |||| || || | || || ||||| || || || || || ||||| Sbjct 1959645 CAACAAGATCATCGATGTCAACTACTACCCAGTTGAAGAAGCTCGTAACTCGAACATGCG 1959704 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 || | ||||||||| | || |||||||| || || ||| || || ||| || || Sbjct 1959705 CCATCGTCCTATTGGTCTTGGAGTTCAAGGACTTGCTGATTGCTTCATGTTGATGCGTTA 1959764 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 |||| ||| | |||||| || | || | ||||||||||| || || | Sbjct 1959765 TCCATTCACTTCGAAACAAGCCAGAGATCTCAACAAGAGAATCTTTGAAACGATCTACTA 1959824 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 ||| | |||| || ||||| || |||||||| | || | ||| ||||| ||| Sbjct 1959825 CGCTGCTTTGGAAGCCAGTTGCGAGTTGGCTGAGAGAGACGGACCATATTCGACATATGA 1959884 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--G 76441 ||| ||||| | ||| |||| |||||||| || ||||||| || | ||||| | Sbjct 1959885 GGGATCTCCAGTGTCGAAAGGACAACTTCAGTTCGACATGTGGG-GTGTCACACCAACCG 1959943 Query 76442 CTCAACTACGACTGG---GATGTTCTCAAGGAA--CGCATC--AAG------GAGA---- 76484 |||| | ||||||| | | ||| ||| || ||| | ||| |||| Sbjct 1959944 ATCAA-TGCGACTGGGCCGCTCTTCGCAAAAAAATCGCCACGTAAGTGAATTGAGAATCA 1960002 Query 76485 -------------------------------AGGGTCTTCGTAACAGTCTTTTGATGGCA 76513 | || | || ||||||||| ||||||| Sbjct 1960003 CAATATAATTTTAATTGAAATTTTTTCAGACACGGAATCCGCAACAGTCTTCTGATGGCT 1960062 Query 76514 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATAC 76573 ||||||||||| || || || || ||||| | || || ||||| | |||| |||||| Sbjct 1960063 CCAATGCCAACTGCTTCTACTGCTCAAATTCTTGGAAACAATGAGTCGATTGAGCCATAC 1960122 Query 76574 ACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCAC 76633 || |||||||||| | | || | || || || || ||||| || Sbjct 1960123 ACCTCAAACATCTATTCTCGTCGTGTTCTTTCTGGAGACTTCCAGATAGTCAATCCACAT 1960182 Query 76634 CTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCATG 76690 | |||| || | ||| || | ||| | | || |||||| | ||||| Sbjct 1960183 ATGCTCAAGGATTTGGTTGAGAGAGGATTGTGGACTGATGAAATGAAGAACCGCCTCATA 1960242 Query 76691 GTGAA-AGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCT 76749 | || | | || |||||||| || ||| |||| ||||||| ||| || ||| | || Sbjct 1960243 GCCAACAAC----GGATCCATTCAGAACATCCCAGAAATCCCAGCTGACATTAAGGAGCT 1960298 Query 76750 CTACCGCACAGTGTGGGAAA----TCAAGATGAAAGATGTCATTGACATGGCCGCAGATC 76805 ||| | ||| |||||||||| |||| | |||| ||||||| ||||| || |||| Sbjct 1960299 CTATCTCACTGTGTGGGAAATCTCTCAAAAGGAAA----TCATTGAGATGGCTGCTGATC 1960354 Query 76806 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAA-CGATG 76864 |||| |||||||||||| |||| | | ||| | ||||| | |||| | | | Sbjct 1960355 GTGGAGCATTCATTGATCAATCTCAATCTCTCAATATTCACATGGCTAAACCAAGCTACG 1960414 Query 76865 -TCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923 | ||| || |||| ||||| | |||| ||||| || || || || || |||||||| Sbjct 1960415 CTGCAA--TCACTTCGATGCACTTCTACGGATGGAAGCAAGGCCTTAAGACTGGAATGTA 1960472 Query 76924 CTA 76926 ||| Sbjct 1960473 CTA 1960475 >seq3666 Length=2156258 Score = 107 bits (118), Expect = 2e-18 Identities = 272/410 (66%), Gaps = 8/410 (2%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||| || || || ||| ||| ||| |||| | || || || || ||||| || || Sbjct 155378 TGGAGCTAAAATTCCCAAAGGAGCCATTCTGACCGGACCCCCTGGAACAGGAAAAACTCT 155319 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAA 175393 |||||| ||| | || || ||| ||||||| |||||||| | || ||| | | Sbjct 155318 CCTCGCAAAAGCAACGGCAGGAGAAGCAAATGTGCCATTCATT-ACTGTCTCCGGATCCG 155260 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | ||| | || |||||||||||||| || | ||| ||||| || | || ||| | Sbjct 155259 AGTTTCTTGAAATGTTTGTTGGTGTAGGACCAGCAAGAGTTCGTGACATGTTCTCAATGG 155200 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | | | ||| ||||||||| | ||||||||||| ||||| || || || | || Sbjct 155199 CGAGAAAGAATTCTCCATGTATTTTATTCATTGATGAAATTGACGCTGTTGGTAGAAAAA 155140 Query 175514 GCAGCG---CTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 | | | || || ||| | | || || |||| | ||| |||||||||| | Sbjct 155139 GAGGAGGAAAAGGAGGAATGGGTGGACATTCTGAACAAGAAAACACACTTAATCAACTTC 155080 Query 175571 TCACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTA 175627 | ||||||||| || || | | | || | | || | |||||||| || |||| Sbjct 155079 TGGTCGAGATGGACGGATTTACTACCGACGAATCATCCGTTATTGTTATTGCTGCTACTA 155020 Query 175628 ATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 || | || ||||| || ||| || || || || || |||||||||||| Sbjct 155019 ATAGAGTTGATATTCTCGATTCTGCTCTTCTACGTCCCGGTCGTTTTGAT 154970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542232369600