Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq3587 136 1e-27 >seq3587 Length=342905 Score = 136 bits (150), Expect = 1e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 1 GGGCGGCGACCTCGCAGATTCTCGCTATTTATGAAAATTTTCAGGCATTTGCCGTTTCCG 60 ||||||||||||||| | || ||||||||||||||||||||| || | | |||||||| Sbjct 27341 GGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCG 27282 Query 61 TTCTTCTTCTCGCTAATTCATTGTTTTAACTGTAAACACCCCCTGAAAAGAAAGGAAATG 120 ||||||||| ||| | | |||||| | | ||| |||| ||||||| |||||||| | Sbjct 27281 TTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAAAAAGGAAACG 27222 Query 121 ATAAGCCTTAAAAACG-GCTAAATAGCCAGAGGGCGTTTCCTTTCTCTGTTTTTGTGTAT 179 | | | | ||| || ||| | ||| | |||||||||||||||||||||| | Sbjct 27221 ACAGGTGCTGAAAGCGAGCTTTTTGGCC-TCTGTCGTTTCCTTTCTCTGTTTTTGTCCGT 27163 Query 180 GGAGTGAGCTATGGAGGTC 198 ||| ||| | ||||| ||| Sbjct 27162 GGAATGAACAATGGAAGTC 27144 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 46081 TATGCAATTGATAATTATTATCA-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTACGG 46139 |||| | ||||||| ||||||| ||| |||||||||||||| |||||| | ||||||| Sbjct 27400 TATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGG 27341 Query 46140 GGCGGCGACCT 46150 ||||||||||| Sbjct 27340 GGCGGCGACCT 27330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147551969220480