Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq802 1016 0.0 >seq802 Length=2299 Score = 1016 bits (1126), Expect = 0.0 Identities = 1537/2160 (71%), Gaps = 52/2160 (2%) Strand=Plus/Minus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 || ||||| |||||||| ||||||||| |||||| | || || | ||| || || Sbjct 2271 GCGGCCATATACTCGGCCGGGTAGTGCTCCTTCAGGTAGGCGGTCCAGTAGCTGACGACG 2212 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 |||||||| |||||||| ||||||||||| |||||| | | |||||||| ||| | |||| Sbjct 2211 CCGTACGCGGCCGAGTGGGCCTTGTTGAACGCGTAGTCCGAGAACGGGAGCAGGATGTCC 2152 Query 39471 CACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTC 39530 || | |||| ||| || | || ||| |||| ||||| | || | |||| | Sbjct 2151 CAGAGCGCCTTGATCGCCGCCTCGGAGAAGCCGCGCTCCTTCATGCCGCCCGAGAAGCCC 2092 Query 39531 ACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTT---GCCCATCGCCCGGCGAAGCAGG 39587 || ||| |||| | || ||||| ||||||||| ||||||||| ||||| || | | Sbjct 2091 TCGTACTGCTTGTCGAG---CTCGGACTTCTTCTTCTTGCCCATCGCGCGGCGGAGGATG 2035 Query 39588 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGG 39647 || || || ||||| | | | ||||||| ||| || | | | ||||||||||| Sbjct 2034 TCAGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGACATGACCTGCTCCTGA 1975 Query 39648 TAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGG 39707 |||||||| || | |||||| || ||||| ||| ||| | || | | |||||| Sbjct 1974 TAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGTTCCTCGAGCTCGGGA 1915 Query 39708 TGGATCGGCGTGATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTTCGTGTGAGACCCC 39767 |||||||| ||||||| |||| | |||||||| || || |||||||| ||||| || | Sbjct 1914 TGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAGTTGGTGTGCGAGTCG 1855 Query 39768 ACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCC 39827 | ||||| || ||||| ||||||||||||| || ||||||||||||||||||||||| Sbjct 1854 GCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACCGCCGAGATGTCCTCGAAGTTGTCG 1795 Query 39828 GGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGC 39887 ||||||| || || ||||| |||||| | |||||||||||||||||| || |||| Sbjct 1794 GGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGC 1735 Query 39888 GTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGG 39947 |||||||| | ||| ||||| ||||| | | | |||||| || | | ||| ||| Sbjct 1734 GTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGCTCCAGGCGCTCGAGG 1675 Query 39948 TCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGG 40007 |||| | || || |||||||||||||||||||||| |||||| |||||||||||| Sbjct 1674 TCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCCGAGATGATCGTGAGG 1615 Query 40008 TTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCG 40067 || || ||||| |||||||||||||| | |||||| || |||||||| | ||||||||| Sbjct 1614 TTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCGCAGGTTGGGTAGTCG 1555 Query 40068 AACTGCGTGATCGTCGCGCCGTCCTGCGGTCGCACCCACACCGGGATGTGGTCGACCAGA 40127 |||||||||| || |||||||||| || | || || ||| ||||| ||| Sbjct 1554 AACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTGCAGGGGAATGATGTCGATCAGC 1495 Query 40128 GGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCG 40187 || ||| |||||||| || || || |||||||| ||| |||||| || || ||| Sbjct 1494 GGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGCCGCTTCAGGCCCTCG 1435 Query 40188 AGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGG 40247 || |||||||| |||||| || ||| || || || || | | | | ||||| Sbjct 1434 AGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGGATCCTCGGTGAGCACGGCCCGG 1375 Query 40248 ATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATC 40307 | |||||| ||||||| ||| ||||||||||||| | | ||| || ||| || || Sbjct 1374 AACTCGGCCGCCTCCTTGTAGCGAGGGTGCTCGGGATCGGTGATGCCCGAGAGCGGGATG 1315 Query 40308 GAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGC 40367 || |||| ||| ||| ||| |||||| || ||||||||||| | ||| || Sbjct 1314 TCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTCGCCCATACCGAACGGG 1255 Query 40368 TTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTC 40427 | |||||||| | |||||||||| ||| | || ||||||| |||||| || Sbjct 1254 AAGCAGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTTGATCGTTCCGTAGGTG 1195 Query 40428 GCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCA 40487 |||| ||||| || ||| | ||||||||| |||||||||| ||| |||||||| Sbjct 1194 ACGATTTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTACATGATGACCTCGCCG 1135 Query 40488 CGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40547 ||||| || ||||||||||||| ||||| |||||||| || ||||| |||||||| ||| Sbjct 1134 CGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGACGCGATCGGGGTTGAGG 1075 Query 40548 AACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40607 || |||||||||||||||||||||| |||||| ||||| |||||||| | | | ||||| Sbjct 1074 AATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGTGATGCGCATGGCGTAG 1015 Query 40608 GCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTC 40667 ||||||| || || || | ||||| || || ||||| || | || |||||| |||||| Sbjct 1014 GCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCGGATGCCGTTGTCCTTC 955 Query 40668 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATC 40727 | |||| ||||||||| ||||| ||||||||||| |||||||||||||| |||| Sbjct 954 GACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAAGCCCATCTGCGTGATG 895 Query 40728 ATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTAC 40784 | | |||||||||||| | |||||||| || | |||| | ||||| ||||||| Sbjct 894 ACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGGGATGCCGCTCGGGTAG 838 Query 40785 CGACGACGC-GCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTC 40843 || || || ||| ||||||| | ||||||| || ||| || | || || Sbjct 837 CGGTAGTGCAGCCCCT-TCTCGACCTCCTTGATGAACCAGCTGTCCTCGGTCTCGCCATC 779 Query 40844 GGGCACCGGGAACTTCGGCATCAGGTT----CTCGTGCTCGAACATGCCGGTGGTGTCGA 40899 ||||||||| | |||||| ||| |||| | |||| || || | | Sbjct 778 GGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAACTCCACGTTG----CAA 724 Query 40900 CCATCTCGGCGATGTCCAGCGTGGTCCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGA 40959 | |||||||||| ||||||| | || | | | || | | | ||| || Sbjct 723 C--GCTCGGCGATGAGCAGCGTGTT----GTCGCACGCGTCCGGGAAGTCGCGGA--AGA 672 Query 40960 TG-GCCGCCATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGG 41018 || |||| ||||||||| || | ||| |||||||| || ||||| ||||| ||||||| Sbjct 671 TGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCGAGCCGTCGAACTTGAAGCGG 613 Query 41019 TGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGAC 41078 | |||| ||||| || ||| | ||| ||||| ||||| || || | ||| || Sbjct 612 TTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCAGCGC--CGAGTGCG-CCTCG 556 Query 41079 TCCTCGGC--GGTG-ACGTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGC 41135 | ||||| ||| |||||||| ||||||||| | || | | || | ||||| Sbjct 555 GCGTCGGCCTCGTGCACGTAGTGCAGGTCGTTCGTGGCGACGAGCGGGATCTTGAGGTCG 496 Query 41136 TTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATG 41195 | ||| | | || || |||||||||||||||| |||| |||||||||||| Sbjct 495 CGCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGATGTCGAGCCCGTGGTCCATG 436 Query 41196 AGTTCGAGCAGGTAGCGCTCGCGACCCAGGATCTCCAGCCAGTCGCCAGCGGCCCTGAC- 41254 || ||| | | || ||| | || | ||| ||| | | ||| | || | |||| | Sbjct 435 AGCTCGCAGAAGAAGTTCTCTCTGCCGAAGATGTCCTGGAACTCGGCCGCCG-CCTGCCG 377 Query 41255 TGCCTCGTCGTACTGACCCAGGTTCAGCCTGGTCATGACTTCGCCACCAGGGCACCCCGT 41314 |||||||||||||| || ||| ||| | |||| || ||||| ||||| ||||| Sbjct 376 GGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGATCTCGCCCGAGGGGCAGCCCGT 317 Query 41315 GGTTCCGATGATGCCCTCGCTGCA-CTCGGCGACGAGTTCCTTGTCGAGGCGGGCGTACT 41373 || ||||| |||| || | | || || | || || ||| | || | || Sbjct 316 CGTGGTGATGAGCCCCTTGCCGTAGGTCTGC-AGCAGCTCGCGGTCCATACGCG---GCT 261 Query 41374 TG-CCCATCAGCCCCTCCTGGTA--GGAGCGAGACGTGATGCGCATGAGGTTGTGAAGGC 41430 || | ||||| | ||| | | ||| ||| | || | ||||||||| | || Sbjct 260 TGAAGTAGTAGCCCTGCATGGAAGCGTAGCTCGAC---AGCCGGAAGAGGTTGTGCATGC 204 Query 41431 CCGTCTTGTTCTGCGCGAGCATGGTCATGTGCGTGTACGCACCGTTACCCGACACGTCGT 41490 || | ||| || ||||||||||||||| ||||| || ||| ||||||||||||| Sbjct 203 CCTCGGTCGTCTCCGAGAGCATGGTCATGTGGGTGTAGGCGCCGGCGCCCGACACGTCGT 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163877657695560