Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq802 1038 0.0 >seq802 Length=2299 Score = 1038 bits (1150), Expect = 0.0 Identities = 1610/2263 (71%), Gaps = 75/2263 (3%) Strand=Plus/Minus Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698 || ||||| |||||||| ||||||||| |||||| | || || | ||| || || Sbjct 2271 GCGGCCATATACTCGGCCGGGTAGTGCTCCTTCAGGTAGGCGGTCCAGTAGCTGACGACG 2212 Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758 |||||||| |||||||| ||||||||||| |||||| | | |||||||| ||| | |||| Sbjct 2211 CCGTACGCGGCCGAGTGGGCCTTGTTGAACGCGTAGTCCGAGAACGGGAGCAGGATGTCC 2152 Query 39759 CACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTC 39818 || | |||| ||| || | || ||| |||| ||||| | || | |||| | Sbjct 2151 CAGAGCGCCTTGATCGCCGCCTCGGAGAAGCCGCGCTCCTTCATGCCGCCCGAGAAGCCC 2092 Query 39819 ACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTT---GCCCATCGCCCGGCGAAGCAGG 39875 || ||| |||| | || ||||| ||||||||| ||||||||| ||||| || | | Sbjct 2091 TCGTACTGCTTGTCGAG---CTCGGACTTCTTCTTCTTGCCCATCGCGCGGCGGAGGATG 2035 Query 39876 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGG 39935 || || || ||||| | | | ||||||| ||| || | | | || |||||||| Sbjct 2034 TCAGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGACATGACCTGCTCCTGA 1975 Query 39936 TAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGG 39995 |||||||| || | |||||| || ||||| ||| ||| | || | | |||||| Sbjct 1974 TAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGTTCCTCGAGCTCGGGA 1915 Query 39996 TGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCC 40055 |||||||| ||||||| |||| | |||||||| || || |||||||| ||||| || | Sbjct 1914 TGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAGTTGGTGTGCGAGTCG 1855 Query 40056 ACGCCCATCGGACCAGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCC 40115 | ||||| || || || ||||||||||||| || ||||||||||||||||||||||| Sbjct 1854 GCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACCGCCGAGATGTCCTCGAAGTTGTCG 1795 Query 40116 GGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGC 40175 ||||||| || || ||||| |||||| | |||||||||||||||||| || |||| Sbjct 1794 GGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGC 1735 Query 40176 GTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGG 40235 |||||||| | ||| ||||| ||||| | | | |||||| || | | ||| ||| Sbjct 1734 GTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGCTCCAGGCGCTCGAGG 1675 Query 40236 TCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGG 40295 |||| | || || |||||||||||||||||||||| |||||| |||||||||||| Sbjct 1674 TCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCCGAGATGATCGTGAGG 1615 Query 40296 TTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCG 40355 || || ||||| |||||||||||||| | |||||| || |||||||| | ||||||||| Sbjct 1614 TTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCGCAGGTTGGGTAGTCG 1555 Query 40356 AACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGC 40415 |||||||||| || |||||||||| || | || || ||| ||||| |||| Sbjct 1554 AACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTGCAGGGGAATGATGTCGATCAGC 1495 Query 40416 GGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCG 40475 || ||| |||||||| || || || |||||||| ||| |||||| || || ||| Sbjct 1494 GGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGCCGCTTCAGGCCCTCG 1435 Query 40476 AGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGG 40535 || |||||||| |||||| || ||| || || || || | | | | ||||| Sbjct 1434 AGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGGATCCTCGGTGAGCACGGCCCGG 1375 Query 40536 ATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATC 40595 | |||||| ||||||| ||| ||||||||||||| | | ||| || ||| || || Sbjct 1374 AACTCGGCCGCCTCCTTGTAGCGAGGGTGCTCGGGATCGGTGATGCCCGAGAGCGGGATG 1315 Query 40596 GAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGC 40655 || |||| ||| ||| ||| |||||| || ||||||||||| | ||| || Sbjct 1314 TCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTCGCCCATACCGAACGGG 1255 Query 40656 TTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTC 40715 | |||||||| | |||||||||| ||| | || ||||||| |||||| || Sbjct 1254 AAGCAGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTTGATCGTTCCGTAGGTG 1195 Query 40716 GCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCA 40775 |||| ||||| || ||| | ||||||||| |||||||||| ||| |||||||| Sbjct 1194 ACGATTTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTACATGATGACCTCGCCG 1135 Query 40776 CGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40835 ||||| || ||||||||||||| ||||| |||||||| || ||||| |||||||| ||| Sbjct 1134 CGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGACGCGATCGGGGTTGAGG 1075 Query 40836 AACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40895 || |||||||||||||| ||||||| |||||| ||||| |||||||| | | | ||||| Sbjct 1074 AATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGTGATGCGCATGGCGTAG 1015 Query 40896 GCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTC 40955 ||||||| || || || | ||||| || || ||||| || | || |||||| |||||| Sbjct 1014 GCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCGGATGCCGTTGTCCTTC 955 Query 40956 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATC 41015 | |||| ||||||||| ||||| ||||||||||| |||||||||||||| |||| Sbjct 954 GACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAAGCCCATCTGCGTGATG 895 Query 41016 ATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTAC 41072 | | |||||||||||| | |||||||| || | |||| | ||||| ||||||| Sbjct 894 ACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGGGATGCCGCTCGGGTAG 838 Query 41073 CGACGACGC-GCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTC 41131 || || || ||| ||||||| | ||||||| || ||| || | || || Sbjct 837 CGGTAGTGCAGCCCCT-TCTCGACCTCCTTGATGAACCAGCTGTCCTCGGTCTCGCCATC 779 Query 41132 GGGCACCGGGAACTTCGGCATCAGGTT----CTCGTGCTCGAACATGCCGGTGGTGTCGA 41187 ||||||||| | |||||| ||| |||| | |||| || || | | Sbjct 778 GGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAACTCCACGTTG----CAA 724 Query 41188 CCATCTCGGCGATGTCCAGCGTGGTCCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGA 41247 | |||||||||| ||||||| | || | | | || | | | ||| || Sbjct 723 C--GCTCGGCGATGAGCAGCGTGTT----GTCGCACGCGTCCGGGAAGTCGCGGA--AGA 672 Query 41248 TG-GCCGCCATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGG 41306 || |||| ||||||||| || | ||| |||||||| || ||||| ||||| ||||||| Sbjct 671 TGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCGAGCCGTCGAACTTGAAGCGG 613 Query 41307 TGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGAC 41366 | |||| ||||| || ||| | ||| ||||| ||||| || || | ||| || Sbjct 612 TTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCAGCGC--CGAGTGCG-CCTCG 556 Query 41367 TCCTCGGC--GGTG-ACGTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGC 41423 | ||||| ||| |||||||| ||||||||| | || | | || | ||||| Sbjct 555 GCGTCGGCCTCGTGCACGTAGTGCAGGTCGTTCGTGGCGACGAGCGGGATCTTGAGGTCG 496 Query 41424 TTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATC 41483 | ||| | | || || |||||||||||||||| |||| ||||||||||| Sbjct 495 CGCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGATGTCGAGCCCGTGGTCCATG 436 Query 41484 AGCTC-CAG--GAAGTACCGGTCACGCCCGAAGACCTCCAGGTAC-CGACCGGCCTCCTT 41539 ||||| ||| ||||| | || | ||||||| ||| || || || || ||| ||| Sbjct 435 AGCTCGCAGAAGAAGTTC---TCTCTGCCGAAGATGTCCTGGAACTCGGCC-GCCGCCTG 380 Query 41540 CACGGCCTCGTCGTACTGCCCGAGGTTCAGCCGGGTCATGATCGCACCGCCAGGACATCC 41599 | |||||||||||||||||||||| ||| |||||| |||| | || || || || Sbjct 379 CCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGATCTCGCCCGAGGGGCAGCC 320 Query 41600 GGTCGTGACGACCAGGCCCTCGTTGT-GCTCGGCGACCAGGTCGAAGTCCATGCGCGGGT 41658 |||||| || || |||| | || | || || | ||| ||| |||||| ||||| Sbjct 319 CGTCGTGGTGATGAGCCCCTTGCCGTAGGTCTGC-AGCAGCTCGCGGTCCATACGCGG-- 263 Query 41659 ACTTCCCG-AGCAGGCCCTCCTGGTA-CG-ACCGCGAGCTGAGCTTCATGAGGTTGTGCA 41715 ||| | || || || | ||| | || | | ||| ||| | ||||||||||| Sbjct 262 -CTTGAAGTAGTAGCCCTGCATGGAAGCGTAGCTCGA---CAGCCGGAAGAGGTTGTGCA 207 Query 41716 GGCCGGTCTTGTTCGT---GGAGAGGATCGTGAGGTGCGTGTACGCACC-CCGACCGCTC 41771 ||| || | |||| ||||| || || | ||| ||||| || || || ||| | Sbjct 206 TGCC---CTCGGTCGTCTCCGAGAGCATGGTCATGTGGGTGTAGGCGCCGGCGCCCG-AC 151 Query 41772 ACGTCGTACCGCTTCTGGTCTTCCGTGCCCCACTGGACTCGCTCCTGGTCGAAGC---GG 41828 ||||||| ||| | | | ||||||| | || || || |||| || || Sbjct 150 ACGTCGT--CGC----CGCCACCGCTGCCCCAGCGCACGCGGGTCTTGTCGGTGCGGTGG 97 Query 41829 GAGTCCGGGGCCATGTACGCCTCGATGCCGATGATCGGCTTGA 41871 | | | |||| | ||| |||||||||||||||||||| |||| Sbjct 96 GTGCCGGGGGTGAGGTAGGCCTCGATGCCGATGATCGGGTTGA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164837615857560