Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3666 168 2e-36 seq3642 87.8 5e-12 >seq3666 Length=2156258 Score = 168 bits (186), Expect = 2e-36 Identities = 238/331 (72%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| |||||||||| |||||||| |||||||| | | ||| |||||||| | |||| Sbjct 155139 CTTTTTCTACCAACAGCGTCAATTTCATCAATGAATAAAATACATGGAGAATTCTTTCTC 155198 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || |||| || | || | || | | || ||| | ||||||| ||||||| | ||| Sbjct 155199 GCCATTGAGAACATGTCACGAACTCTTGCTGGTCCTACACCAACAAACATTTCAAGAAAC 155258 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || || |||| || |||||||| ||||||||||| ||||| ||| | || || Sbjct 155259 TCGGATCCGGAGACAGTAATGAATGGCACATTTGCTTCTCCTGCCGTTGCTTTTGCGAGG 155318 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC-CTC-TAATAGAACTCCCTTTGGTACTTTTGCCC 289258 || || || ||||||||||| ||||| || ||| | |||| || || | ||| || | Sbjct 155319 AGAGTTTTTCCTGTTCCAGGGGGTCCGGTCAGAATGG--CTCCTTTGGGAATTTTAGCTC 155376 Query 289259 CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 || | |||||||| || ||| | || ||||| | |||| |||| | ||| || Sbjct 155377 CAAGATCCTTATATTGCTGAGGATTTTTCAAAAAGTTGACAAATTCCATGATCTCAATTT 155436 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAA 289349 | || || || || || |||||||||| ||| Sbjct 155437 TCGCTTCTTCGCAGCCGGCTACATCAGAAAA 155467 >seq3642 Length=748538 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||||||||| ||||| ||||| | || || | || ||| | || | || || Sbjct 123017 ATAAGACCACAATTATTGCACACGTATACATGATATGGGTCTGATACTTCGAAGAGACGT 123076 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 || ||| ||| ||| ||||| ||||| ||||||||| |||||||| |||||| Sbjct 123077 TCCCGAAGGAACTGAGTTGCTCCGTGAGAAATTTGACAATCACGTTCCATTTCTCCGAAA 123136 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG 251567 |||||||| ||||| ||||| || || || ||| ||||| Sbjct 123137 CGAAGACCTCCATCCCGAGCTCTTCCTTCCATAGGTTGACG 123177 Score = 87.8 bits (96), Expect = 5e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| |||| ||||| || || |||||||| || || | ||||| ||| Sbjct 123582 ATTGTCATACGAGACGGAACCGCATGAGGGTTAATGATGATATCAGGAGTAAGTCCTTCA 123641 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTG 251963 |||||||| |||||||| | || | | ||| ||| | || || || || || || ||||| Sbjct 123642 GCAGTGAAAGGCATATCTTCTTGC-CGATACATGATACCCATTGTACCTTTCTGACCGTG 123700 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACA 252003 |||||| || || || ||||| ||| | |||||| Sbjct 123701 ACGAGATGCAAATTTGTCTCCAATTTGAGGGAGTCGAACA 123740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471748392376790