Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq802 1068 0.0 >seq802 Length=2299 Score = 1068 bits (1184), Expect = 0.0 Identities = 1560/2168 (72%), Gaps = 68/2168 (3%) Strand=Plus/Minus Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158 || ||||| |||||||||||||||||| ||||| | || || | ||| || || Sbjct 2271 GCGGCCATATACTCGGCCGGGTAGTGCTCCTTCAGGTAGGCGGTCCAGTAGCTGACGACG 2212 Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218 |||||||| |||||||| ||||||||||| |||||| | | ||| |||| ||| | |||| Sbjct 2211 CCGTACGCGGCCGAGTGGGCCTTGTTGAACGCGTAGTCCGAGAACGGGAGCAGGATGTCC 2152 Query 39219 CACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTC 39278 || | |||| ||| || | || ||| |||| ||||| | || | |||| | Sbjct 2151 CAGAGCGCCTTGATCGCCGCCTCGGAGAAGCCGCGCTCCTTCATGCCGCCCGAGAAGCCC 2092 Query 39279 ACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTT---GCCCATCGCCCGGCGAAGCAGG 39335 || ||| |||| | || ||||| ||||||||| ||||||||| ||||| || | | Sbjct 2091 TCGTACTGCTTGTCGAG---CTCGGACTTCTTCTTCTTGCCCATCGCGCGGCGGAGGATG 2035 Query 39336 TCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGG 39395 || || || || || | | | ||||||| ||| || | | | ||||||||||| Sbjct 2034 TCAGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGACATGACCTGCTCCTGA 1975 Query 39396 TAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGG 39455 |||||||||| | | |||| || ||||| ||| ||| | || | | |||||| Sbjct 1974 TAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGTTCCTCGAGCTCGGGA 1915 Query 39456 TGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCC 39515 |||||||| ||||||| |||| | |||||||| || || |||||||| ||||| || | Sbjct 1914 TGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAGTTGGTGTGCGAGTCG 1855 Query 39516 ACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGATGTCCTCGAAGTTGTCC 39575 | ||||| || ||||| ||||||||||||| || || |||||||||||||||||||| Sbjct 1854 GCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACCGCCGAGATGTCCTCGAAGTTGTCG 1795 Query 39576 GGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGC 39635 ||||||| ||||| ||||| |||||| | |||||||||||||||||| || |||| Sbjct 1794 GGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGC 1735 Query 39636 GTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTCCAGG 39695 |||||||| | ||| ||||| ||||||| || |||||||| || | | ||| ||| Sbjct 1734 GTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGCTCCAGGCGCTCGAGG 1675 Query 39696 TCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGG 39755 |||| | || || |||||||||||||||||||||| |||||| |||||||||||| Sbjct 1674 TCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCCGAGATGATCGTGAGG 1615 Query 39756 TTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCG 39815 || || ||||| |||||||||||||| | |||||| || |||||||| | ||||||||| Sbjct 1614 TTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCGCAGGTTGGGTAGTCG 1555 Query 39816 AACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGA 39875 |||||||||| || |||||||||| || | || || ||| ||||| ||| Sbjct 1554 AACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTGCAGGGGAATGATGTCGATCAGC 1495 Query 39876 GGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCG 39935 || ||| |||||||| || || || |||||||| ||| |||||| || || ||| Sbjct 1494 GGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGCCGCTTCAGGCCCTCG 1435 Query 39936 AGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGG 39995 || |||||||| |||||| || ||| || || || || | | | | ||||| Sbjct 1434 AGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGGATCCTCGGTGAGCACGGCCCGG 1375 Query 39996 ATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTCGAGGGGCATC 40055 | |||||| ||||||| ||| ||||||||||||| | | |||||| ||| || || Sbjct 1374 AACTCGGCCGCCTCCTTGTAGCGAGGGTGCTCGGGATCGGTGATGCCCGAGAGCGGGATG 1315 Query 40056 GAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGC 40115 || |||| ||| ||| ||| |||||| || ||||||||||| | ||| || Sbjct 1314 TCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTCGCCCATACCGAACGGG 1255 Query 40116 TTGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTC 40175 | ||||||||| | ||||||||||| ||| | || ||||||| |||||| || Sbjct 1254 AAGCAGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTTGATCGTTCCGTAGGTG 1195 Query 40176 GCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCA 40235 |||| ||||| || ||| | ||||||||| |||||||||| |||||||||||| Sbjct 1194 ACGATTTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTACATGATGACCTCGCCG 1135 Query 40236 CGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 ||||| || ||||||||||||| ||||| |||||||| || ||||| |||||||| ||| Sbjct 1134 CGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGACGCGATCGGGGTTGAGG 1075 Query 40296 AAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40355 || |||||||||||||| ||||||| |||||| ||||| |||||||| | | | ||||| Sbjct 1074 AATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGTGATGCGCATGGCGTAG 1015 Query 40356 GCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTC 40415 ||||||| || || || | ||||| || || ||||| || | || ||||| |||||| Sbjct 1014 GCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCGGATGCCGTTGTCCTTC 955 Query 40416 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATC 40475 | |||| ||||||||| ||||| ||||||||||| ||||| |||||||| |||| Sbjct 954 GACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAAGCCCATCTGCGTGATG 895 Query 40476 ATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTAC 40532 | | |||||||||||| | |||||||| || | |||| | ||||| ||||||| Sbjct 894 ACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGGGATGCCGCTCGGGTAG 838 Query 40533 CGACGACGGGCA--CCTCGATGGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCT 40590 || | | ||| || | |||||| | ||||||| || ||| || | || | Sbjct 837 CG--GTAGTGCAGCCCCTTCTCGACCTCCTTGATGAACCAGCTGTCCTCGGTCTCGCCAT 780 Query 40591 CGGGCACCGGGAACTTCGGCATCAGGTT----CTCGTGCTCGAACATGCCCGTGGTGTCG 40646 |||||||||| | |||||| ||| |||| | |||| | | ||| | | Sbjct 779 CGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAAC-TCCACGTTG---CA 725 Query 40647 ACCATCTCGGCGATCTCCAGCGTGGTCT-TCATGCCCCACTGCCAGATCGGCGAAGA-GT 40704 || ||||||||| ||||||| | | || || | | | || ||| ||||| || Sbjct 724 AC--GCTCGGCGATGAGCAGCGTGTTGTCGCACGCGTC-CGGGAAG-TCGCGGAAGATGT 669 Query 40705 CGATCGCCGCCATCTCTTCGGCGGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGC 40764 |||| |||||| | |||| ||| |||||||| || ||||| ||||| ||||| Sbjct 668 -----GCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCGAGCCGTCGAACTTGAAGC 615 Query 40765 GGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCG 40824 ||||||||| |||||| || ||| | ||| ||||| ||||| || || | ||| || Sbjct 614 GGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCAGCGC--CGAGTGCG-CCT 558 Query 40825 ACTCCTCGGC--GGTG-ACGTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGT 40881 | ||||| ||| |||||||| ||||||||| | || | | || | ||||| Sbjct 557 CGGCGTCGGCCTCGTGCACGTAGTGCAGGTCGTTCGTGGCGACGAGCGGGATCTTGAGGT 498 Query 40882 GCTTCCCGAGCCGGTACAGGTCGTCACGGACCCGGCGCTCGATCTCGATGTCGTGGTCCA 40941 | ||| | | |||||| |||||||||||||||| |||| ||||||||| Sbjct 497 CGCGCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGATGTCGAGCCCGTGGTCCA 438 Query 40942 TGAGTTCG-AGCAG--GTACCGGTCACGCCCGAAGACCTCCAGGTAC-CGACCAGCCTCC 40997 |||| ||| || || || | || | ||||||| ||| || || || || ||| || Sbjct 437 TGAGCTCGCAGAAGAAGTTC---TCTCTGCCGAAGATGTCCTGGAACTCGGCC-GCCGCC 382 Query 40998 TTCACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAG 41057 | | |||||||||||||||||||||| || |||||| |||| | || |||||| Sbjct 381 TGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGATCTCGCCCGAGGGGCAG 322 Query 41058 CCAGTCGTGACGACCAGGCCCTCGTTGT-GCTCGGCGACCAGCTCGAAGTCCATGCGCGG 41116 || |||||| || || |||| | || | || || | ||||||| |||||| ||||| Sbjct 321 CCCGTCGTGGTGATGAGCCCCTTGCCGTAGGTCTGC-AGCAGCTCGCGGTCCATACGCGG 263 Query 41117 GTACTTCCCG-AGCAGGCCCTCCTGGTA-CG-ACCGAGAGCTGAGCTTCATGAGGTTGTG 41173 ||| | || || || | ||| | || | | || ||| | ||||||||| Sbjct 262 ---CTTGAAGTAGTAGCCCTGCATGGAAGCGTAGCTCGA---CAGCCGGAAGAGGTTGTG 209 Query 41174 GA-GCC--CGGTCTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCGCCGTTGCCCGA 41230 | ||| ||||| | | | ||||| || || | ||| ||||| |||||| |||||| Sbjct 208 CATGCCCTCGGTCGTCTCC---GAGAGCATGGTCATGTGGGTGTAGGCGCCGGCGCCCGA 152 Query 41231 CACGTCGT 41238 |||||||| Sbjct 151 CACGTCGT 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163317682101060