Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq802 113 4e-20 >seq802 Length=2299 Score = 113 bits (124), Expect = 4e-20 Identities = 207/300 (69%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 105009 GAGGTCCGCACCATCAC-CAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTA 105067 ||| || || |||||| ||| | | |||| |||| |||||| ||| |||||||||| Sbjct 884 GAGATCGGCGTCATCACGCAG-ATGGGCTTCCCCGGCTACTTCCTCGTGGTCGCCGACTT 942 Query 105068 CACCAAGTGGGCTAAGGACC---GCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGG 105124 || ||| ||| | |||||| |||| | ||| || ||||| ||||| |||| || || Sbjct 943 CATCAACTGGTCGAAGGACAACGGCATCCGCGTGGGCCCCGGTCGTGGCTCGGGCGCGGG 1002 Query 105125 CTCGCTCGTCTCGTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGAT 105184 || | ||| | ||| ||| ||||||||| ||||| ||| | || ||| || || Sbjct 1003 ATCCATGGTCGCCTACGCCATGCGCATCACCGATCTCGATCCGCTGCAGCACGGACTCAT 1062 Query 105185 GTTCGAGCGGTTCATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCC 105244 |||||||| ||| || || || || | |||||| |||| |||||||| Sbjct 1063 CTTCGAGCGATTCCTCAACCCCGATCGCGTCTCGATGCCCGACTTCGACGTCGACTTCGA 1122 Query 105245 GCAGAAGCGTCGCGGCGAGGTCGTCGACTACATCGCCGACCGCTACGGCCACGACTGCGT 105304 | ||||||||||||||| || ||| || |||| |||||| |||| |||| Sbjct 1123 TGATCGCCGTCGCGGCGAGGTCATCATGTACGTCACCGAGAAGTACGGCGACGAGCGCGT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456052677623600