Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021556.1 Length=39981 Score E Sequences producing significant alignments: (Bits) Value seq2028 150 5e-32 seq1401 120 8e-23 >seq2028 Length=10780 Score = 150 bits (166), Expect = 5e-32 Identities = 807/1256 (64%), Gaps = 56/1256 (4%) Strand=Plus/Minus Query 2043 TACGACGGCAAGTACGCGATCCGGCAGATCGGCAACCTGATTCCCCCGGAGTATCTGCGG 2102 || ||||| ||| |||| |||| ||| |||| | | | || || ||| |||| | ||| Sbjct 5410 TATGACGGGAAGAGCGCGCTCCGCCAGGTCGGGACCATCATCCCTCCGCAGTACCACCGG 5351 Query 2103 ACGGCGACTGTGCTCGGCTGGTCGGCGAAGGCCGTCGACACGCTGGCGCGGCGCTGCAAC 2162 || || |||||| ||| | ||||||| |||||| ||| || || ||||||| Sbjct 5350 CTGGGCCTTGCGCTCGGGTGGGCCGCGAAGGGCGTCGATGGGCTCGCCCGTCGCTGCACG 5291 Query 2163 CTCGAATCGTTCGTCTGGCCGGACGGCGA-CTACGGCAGCATCGGCGGGCCCGACGTCTG 2221 ||||| | || ||| || | ||||| || || || |||| | || | | Sbjct 5290 CTCGATGACATGGTTTGGGCGAATGGCGATCTCGGGTCGC-TCGGGTTCGCTGAGCTGCG 5232 Query 2222 GGACGAGAATTTCTTCGCGACGAAGGCGAA-CA---ACGCCATGGTGTCGTCGCTGATTC 2277 |||| ||| ||| || | || || | || |||| || | || ||| | | Sbjct 5231 GGACTCGAACTTCCTCATGTCGGAGCTGTCGCAGGCACGCACTGAT----TCCCTGCTGC 5176 Query 2278 ACGGGCCGGCGTTTCTCATCAACACCGAGGGCGGCGCCGGCGAGCCGGAATCGCTGATTC 2337 |||| ||| || |||| ||| |||| | | | |||||| | | ||||||| Sbjct 5175 ACGGCGTTTCGTACCTGATCACCACGAAGGGTGATGAGGATGAGCCGCGAGCTCTGATTC 5116 Query 2338 ACGTCAAATCAGCGATGCAGGCGACCGGCGAGTGGAACTCGCGC---CGGAATGCCATGG 2394 ||| || || || | ||||| || ||||||||| ||| ||| ||| ||| Sbjct 5115 ACGCGAAGGACGCCCTGAACGCGACTGGTGAGTGGAACAACCGCAAGCGGC--GCC-TGG 5059 Query 2395 ACTCGCTGTTGTCGATCACCAGCCGCGACGCCGAAGGCCACCCGACCGGAATCGCGCTGT 2454 || ||| ||||| | || ||| ||| |||| | | ||||| ||| |||| Sbjct 5058 ACAACCTGCTGTCGGTGAC-AGC-GCGG-GCCGGGAACAAGATCACCGGGTTCGTCCTGT 5002 Query 2455 ATGAGGACGGCGTGACCGTGNNNNCGGACCTGGACGACGACGGCGATTGGCAGGTCGAC- 2513 | ||||| || |||||| |||| || | ||| | | | |||||||| ||| Sbjct 5001 ACCTCGACGGGGTAACCGTGAACGCGGATCTTGTCGATG---GAAAGTGGCAGGTGGACC 4945 Query 2514 GTGCGGACGCACAAGCTCGGCGT-TCCCGTC-GAGGTGCTGCCATACAAGCCGAGGGAGG 2571 || |||| || | ||| | ||||| | || |||| ||||||||| | | | Sbjct 4944 GTTCGGAG---CATGGGTGGCATGTCCCGGCTGACCCGCTGGTGTACAAGCCGCGT-ACG 4889 Query 2572 ACCGGCCGCTTGGGTCAAGC-CGCATCACCCGGCCGGTTATGTCGCTTCAGCAACGCGCG 2630 | || |||| | | |||||||| || ||| || || | ||| | |||| Sbjct 4888 TCGAAGCGTATGGGGCGGTCGCGCATCACGCGCGCGGCGATCTCACACCAGTACGCCGCG 4829 Query 2631 CT-CAAGGGCTGCATCCGCATGGACGGACACGCCGACGTCTACAGCTTCCCGCAGCTGAT 2689 || | || || | ||| | || | |||| ||||| | || |||||||||| || Sbjct 4828 CTTCGAGAACTTG-TGCGCCTCGAAGCACACATGGACGTGTTCACGATCCCGCAGCTCAT 4770 Query 2690 CTTGCTCGGCGCCGACGCGAAGAACT--TCCGCAACAAGGACGGTTCGATGAAGCCGGCC 2747 | |||| ||||| ||| ||| | | || ||| ||||| ||| ||| || | Sbjct 4769 CCTGCTGGGCGCTAACG--AAGCAATGTTCAAGAACGCAGACGGGTCGTACAAGGCGTCT 4712 Query 2748 TGGCAGATCGCGTTGGCGCGCGTGTTCGCGCTGCCCGACGACGAGGACGAACCCGACGCG 2807 ||||||||||| | | ||| | | | || | ||||||||||| || | || | | Sbjct 4711 TGGCAGATCGCTCTCGGGCGTGCGCTGGCTATCCCCGACGACGACGATGCTCCTGCTG-- 4654 Query 2808 GCGCGG--GCCCGCGCGGACGTGAAGCAATTCCCGGCGTCGAGTCCGCAGCCGCATATCG 2865 || ||| | ||||||||||||||||| || | ||| | ||| ||||| ||| Sbjct 4653 GCTCGGATGGGCGCGCGGACGTGAAGCACATCGCTGCGCAGTCGCCGGCACCGCACCTCG 4594 Query 2866 AGATGCTGGAACAGATCGCGATGATGTTCAGCGGCGAGACGTCGATTCCGGTCGAATCGC 2925 | ||| | | | |||| | | || ||| || ||| || | | || Sbjct 4593 CGGCGCTCAACGCGTTGGCGAAGCTCG--AGGCGCGCGAGTACGA--CCTGCCCGAT--- 4541 Query 2926 TCGGATT-CTCGAAT-CG-----CGCGAACCCGACGTCGGCCGACGCGTATATCGCATCG 2978 ||||||| | ||| || |||||||||||| ||| || |||| | || || Sbjct 4540 TCGGATTTCGCGATGACGGACTTCGCGAACCCGACTGGGGCGGATTCGTACACGGCGTCT 4481 Query 2979 CGCGAAGACCTGATCGCCGAAGCCGAAGGCGCGACGGACGACTGGTCGCCGGCGTTCCGC 3038 || || || |||||||||| || || |||||||| || |||||||| | || ||||| Sbjct 4480 CGGGAGAACTTGATCGCCGAGGCGGAGGGCGCGACCGATGACTGGTCTGTGCCGATCCGC 4421 Query 3039 CGATCCATGATCCGCGCGCTGGCGATCAAGAACGGGCTCGACCGGA-TCCCGCCCGAGTG 3097 | || | || || ||||| ||| ||||| ||| ||| | | |||| | || || Sbjct 4420 AACGCGGTGGTGCGTGCTCTGGCAATCCAGAAC-GGCGTGACGGAAGTCCCCGCTGATTG 4362 Query 3098 GAAGACGATCGACGCGAAGTTCCGGTCGCCGCTGTACTTGTCGAAGGCGGCGCAGGCCGA 3157 | | |||||||| |||||| || || ||| |||| |||||||||| || || || Sbjct 4361 GGCGTCGATCGACACGAAGTGGCGTTCTCCGATGTATCTGTCGAAGGCCGCCGTCGCAGA 4302 Query 3158 CGCCGGCGCGAAGATGCTCGGCGCGGGCCCGGAATGGCTCAAGGAAACCGAAGTCGGGCT 3217 || ||||||||| | || | || || || ||| | ||||| || ||||| | Sbjct 4301 TGCGGGCGCGAAGCAGGTCTCGTCTGGTCCTGACTGGTTGAAGGACACTCGCGTCGGTAT 4242 Query 3218 CGAATTGCTCGGGCTGACCCCGCAGCAGGTGAAACGCGCGCTGGCCGAACGCCGGC 3273 ||| ||||||| |||| | ||||||| | | ||||| ||||| || ||| ||| Sbjct 4241 GGAAATGCTCGGCATGACACAGCAGCAGATCGATCGCGCTCTGGCGGAGCGCAGGC 4186 Score = 111 bits (122), Expect = 4e-20 Identities = 296/455 (65%), Gaps = 48/455 (11%) Strand=Plus/Minus Query 885 CAACGGGAGCCGGATCCTGTTCGGCGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGG 944 |||||| ||| |||| |||||||||| |||||| ||| ||||| | ||||||| || Sbjct 6611 CAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGA 6552 Query 945 CGTCGGAATCCTCGTGCTCGACGAGGCGCAGCGGCTCACCGACAAGGCCATGGACGACCT 1004 |||| ||| || |||| ||||||||| || ||||| ||||| |||| ||| | Sbjct 6551 GGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACAT 6492 Query 1005 GATTCCGACGATGAACAC----CGTCGAGAATC-----CGTTGATCCTGCTCACTGGCAC 1055 | | | ||| |||| || | | | || || || | | ||| ||||| Sbjct 6491 GGTCGCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCAC 6432 Query 1056 CCCGCCGCGGCCGACGGACTCGGGCGAAGTGTTCACGATGCTTCGGCAAGACGCGCTCGA 1115 || |||||| |||| || | ||||| | || | || || | || ||||| || Sbjct 6431 GCCCCCGCGGGCGACTGATCCTGGCGAGGAGTGGCTGGAGCGCCGCAATGATGCGCTTGA 6372 Query 1116 C------------------------GGCGAGTCCGAAGGCACGCTGTATGTCGAGTTCTC 1151 ||| ||| || | ||| |||| ||||||||||| Sbjct 6371 GATCAAGCCGATGGATCAGGTTGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTCTC 6312 Query 1152 CGCGGACGAGGGCGCGCACCCCGACGACCGGGCGCAGC-TGCGCAAGGCGAACCCGTCGT 1210 |||||| ||| |||| |||| |||||| || || | |||| ||||| || || |||| Sbjct 6311 GGCGGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCG-AAGGCCAATCCTTCGT 6253 Query 1211 ATCCGCACCGCACCAGTGAGCGCGCGATTCG-----GCGTATGCGAAAGAACCTC---AC 1262 ||| ||||||||| ||| ||| ||| ||| ||||| ||||||||| | Sbjct 6252 TTCCACACCGCACC-----CCGCTCGAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAA 6198 Query 1263 CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATCT 1297 ||| || || || |||||||||| | ||||||| Sbjct 6197 CGAGGACTCGTTCAAGCGTGAGGCGATGGGCATCT 6163 >seq1401 Length=3734 Score = 120 bits (132), Expect = 8e-23 Identities = 434/666 (65%), Gaps = 46/666 (7%) Strand=Plus/Minus Query 675 CCGACAGGTCGGCAAGACGTACCTGATCGGCTGCATCGTGTTCGCCCTGGCGCTGC---- 730 ||| |||||||||||||||| | ||||| | ||| | |||||||| |||| Sbjct 1257 CCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCT----CTGCATCA 1202 Query 731 TCACGCCTGGGCTGACTGTCATCTGGACCGCGCACCGGACGAAGACCGCGAAGGAAACGT 790 || || ||| || ||||||||||||||||||| | ||| | || || |||| Sbjct 1201 TCTTCCCGAAGCTCACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGT 1142 Query 791 TCGGCTCGATGAAGGCCATGTGCGCA-ACGCCGCTGGTGAACGCGCACGTGCGGAACGTC 849 ||| ||| || ||| | | || || | || | |||| | |||| | ||| | || Sbjct 1141 TCGAGTCGCTGCAGGGCTTC-GCCCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATC 1083 Query 850 AGCGACGCGCGCGGCGACGAGGGAATCTATCTGCAC-AACGGGAGCCGGATCCTGTTCGG 908 || | | ||| | || ||| | || || ||||| ||||||| ||||||| Sbjct 1082 CGCCGAGTGAACGGGCAGCAGCAGATC-ACCTTCAAGAACGGCTCCCGGATCATGTTCGG 1024 Query 909 CGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGGCGTCGGAATCCTCGTGCTCGACGA 968 || || ||| ||| ||||| | ||||||||||| |||| || | ||| ||| || Sbjct 1023 TGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGA 964 Query 969 GGCGCAGCGGCTCACCGACAAGGCCATGGACGACCTGATTCCGACGATGAACACCGTCGA 1028 ||||||| ||| | |||||||| | || ||| || | || | | ||| || |||| Sbjct 963 GGCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCC-TCGA 905 Query 1029 -GAATCCGTTGATCCTGCTCACTGGCACCCCGCCGCGGCCGACGGACTCGGGCGAAGTGT 1087 ||| ||| | ||| | || | ||||||||||| || || ||| | ||||||| || Sbjct 904 AGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGT 845 Query 1088 TC-------------ACGATGC-TTCG---GCAAGA----CGCGCTCGACGGCGAG---T 1123 || |||| || ||| ||||| ||| || |||||| Sbjct 844 TCCGCACCCGCCGAAACGAAGCGATCGAGCTCAAGAAGCTCGCCGCCGCGGGCGAGGACA 785 Query 1124 CCGAA---GGCACGCTGTATGTCGAGTTCTCCGCGGACGAGGGCGCGCACCCCGACGACC 1180 ||||| | || ||| || ||||| || ||| ||| | ||| ||| |||||| Sbjct 784 CCGAATCGGACATGCTCTACGTCGAACTCGGCGCAGACCCCGACGCCGACCTGGACGACT 725 Query 1181 GGGCGCAGCTGCGCAAGGCGAACCCGTCGTATCCGCACCGCACCAGTGAGCG-CGCGATT 1239 ||| ||| | |||||| ||||| || || |||||||||||| ||| ||||| Sbjct 724 GGGATCAGGTCGCCAAGGCCAACCCCTCCTACCCGCACCGCACC-CCACGCGAAGCGATC 666 Query 1240 CGGCGTATGCGAAAGAACCTCAC---CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATC 1296 | || | || ||||||||| | ||| || || | | || || | |||||||| Sbjct 665 CTCCGCAACCGCAAGAACCTCGCCGACGACGACTCCTACCGCCGAGAAGGCCTCGGCATC 606 Query 1297 TGGGAC 1302 |||||| Sbjct 605 TGGGAC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127812029549220