Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq1630 102 4e-17 >seq1630 Length=7310 Score = 102 bits (112), Expect = 4e-17 Identities = 214/315 (68%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 12396 AATTGAAACCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCATCTGGACGATG 12455 ||||||| || ||| |||| ||| || |||| ||| |||| ||| || | || ||| Sbjct 6296 AATTGAA-CCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATA 6354 Query 12456 TACATGTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTGC 12515 || | |||| | || | || ||||| || | |||||||| ||||| | || Sbjct 6355 CTAATTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTAT 6414 Query 12516 TTGGGAACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTCT 12575 | || ||| | ||| | ||||||||||||||||| || ||| | ||||| | | Sbjct 6415 TGGGCAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTT 6474 Query 12576 GGAATCGCTCTACAGAGC-CTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTA 12634 ||||||| | || | | | |||||| | | || ||||| ||| | || ||| || Sbjct 6475 GGAATCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTT 6533 Query 12635 ATCGTGCCTGTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAATCTACTGAACGT 12694 | ||||||||| | || | | || | | | || | ||||||| | ||||||||| Sbjct 6534 TTGGTGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGT 6593 Query 12695 GGTGCTGGTGGCTTT 12709 ||||||||||| ||| Sbjct 6594 GGTGCTGGTGGTTTT 6608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231525643828850