Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq210 356 4e-94 >seq210 Length=3885 Score = 356 bits (394), Expect = 4e-94 Identities = 337/430 (78%), Gaps = 0/430 (0%) Strand=Plus/Minus Query 11414 CTGCCGGAGCTGCCAAGCTCGCCGCAGCCACCGTGCCGGGCGGTAAGAAAATAAATCTTA 11473 |||||||||| || ||||| || || ||||| || || ||||| || ||| ||| || Sbjct 3885 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAACCCTGT 3826 Query 11474 ACGTTATGGCTGTTGGTGACGGCGGCGGAAAACTGCCGGTGCCTGATGCCGGTCAGACGC 11533 | ||||| || |||||||| || ||| |||||||||| ||||| ||||||||| Sbjct 3825 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCTGGTCAGACGA 3766 Query 11534 AGCTTGTTAATGAGGTGTGGCGTCATACGCTGAATAAAATCAGCCAGGATAACCGTTACA 11593 | || || ||||||| |||||||| | ||||||||| ||||| ||||||| | | Sbjct 3765 AACTGGTGCATGAGGTCTGGCGTCACGCCCTGAATAAAGTCAGCGTGGATAACAAGAATA 3706 Query 11594 GTAATTACATTGTGGCCGAACTGGTTATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTG 11653 || || || ||||| ||||||||| | ||||| || |||||||||||||||||||||| Sbjct 3705 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCAGAAGTGGGCGGCTTCTGGATGCGTG 3646 Query 11654 AGCTTGGCCTTTACGACGATGAAGGGACGCTGATTGCTGTTGCCAATATGGCCGAAAGCT 11713 | ||||| || || ||||||| || || |||||||| || || || |||| ||||||| Sbjct 3645 AACTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTCGCTAACATGGTAGAAAGCT 3586 Query 11714 ACAAGCCAGAACTGGCTGAGGGCTCAGGGCGTGCGCAGACATGCCGCATGGTCATTATTG 11773 | ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| Sbjct 3585 ATAAGCCTGAACTGGCTGAAGGCTCCGGGCGTGCGCAGACCTGCCGCATGGTTATTATTG 3526 Query 11774 TCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACGATGGTGATGGCGACGCAGG 11833 |||| | || | |||||| | |||| ||||| | | | ||||||||||||||||| Sbjct 3525 TCAGTAACGTGGCGTCTGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 3466 Query 11834 ATTATGTCGA 11843 |||| ||||| Sbjct 3465 ATTACGTCGA 3456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95048657480160