Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq1630 93.3 2e-14 seq1544 87.8 8e-13 >seq1630 Length=7310 Score = 93.3 bits (102), Expect = 2e-14 Identities = 212/315 (67%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 7955 AATTGAAACCAGGTGAAACCAAGTTAGTTGAAACTGGTTTGGCTATTCATCTGGATGATG 8014 ||||||| || ||| |||| ||| ||| |||| ||| |||| ||| || | || ||| Sbjct 6296 AATTGAA-CCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATA 6354 Query 8015 TGAAGTATGCAGCAATGATTCTTCCTCGTTCAGGTCTGGGCCATAAGCATGGTGTAGTGC 8074 || | ||| | | || | || ||||| || |||||||||||||||| | || Sbjct 6355 CTAATTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTAT 6414 Query 8075 TTGGGAACCTTACTGGTCTGATTGATTCAGACTATCAGGGTGAACTTATGGTAAGCCTCT 8134 | || ||| | ||| | ||||||||||| ||||| || ||| | ||||| | | Sbjct 6415 TGGGCAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTT 6474 Query 8135 GGAATCGCTCTACAGAGC-CTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTA 8193 ||||||| | || | | | |||||| | | || ||||| ||| | || ||| || Sbjct 6475 GGAATCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTT 6533 Query 8194 ATCGTGCCTGTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAGTCTACCAAACGA 8253 | ||||||||| | || | | || | | | || | |||||| | || |||| Sbjct 6534 TTGGTGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGT 6593 Query 8254 GGTGCTGGTGGCTTT 8268 ||||||||||| ||| Sbjct 6594 GGTGCTGGTGGTTTT 6608 >seq1544 Length=7090 Score = 87.8 bits (96), Expect = 8e-13 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 15027 GTAGGAGATTTACATGGTTGCTTTGATGAATTCCAAAAAGAGATGTGGGCTG-TTCAGTT 15085 ||||| ||| |||||||||| | |||| || || || | || | | |||| || Sbjct 6447 GTAGGTGATATACATGGTTGTTATGATTTGTTGATGCAACAGCT-TGAACGGGTTCAATT 6389 Query 15086 TAATGCTGAAACAGACTTAATTATCTCTGTAGGTGATTTAATTGACCGTGGTTCACAGAA 15145 ||| ||||| || || | || ||||||| ||| | |||| |||||| | | | Sbjct 6388 TAACTTTGAAAAGGATCTATTGATTGCTGTAGGGGATATTGTTGATCGTGGTCCTGACAG 6329 Query 15146 TGTGAATTGCTTACGTCTGTTAAATGAACCTTGGTTTAAAGCTGTTCTAGGCAATCATGA 15205 | |||| || || | |||| | || |||||||||||||||||| ||||||||||||| Sbjct 6328 TTTGAAATGTTTGCATCTGCTTGCAGAGCCTTGGTTTAAAGCTGTTTTAGGCAATCATGA 6269 Query 15206 AGTAATG 15212 || |||| Sbjct 6268 AGAAATG 6262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230578486195330