Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3649 114 2e-19 seq1032 113 6e-19 seq3667 104 3e-16 seq3657 104 3e-16 seq3650 104 3e-16 seq3665 100 3e-15 seq3263 95.1 1e-13 seq3588 86.0 8e-11 >seq3649 Length=974952 Score = 114 bits (126), Expect = 2e-19 Identities = 205/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||| || ||| |||||| ||||||||||| || || | |||||| |||||| Sbjct 92535 TACTCGGAGACACGCTTCTCGAAGAAGTTGGTCTTTCCATCTATCGAGATGTTCTCCATG 92594 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| || || | ||||| |||| |||||||||||| ||| |||| | | Sbjct 92595 AAGTCGAATGGATTCTTCACATTGTACAGCTTGTCGCATCCGAGCTCCGCAAGCAAGTGA 92654 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 |||||||| ||||||||||| || |||| || | ||||||||| || | | || Sbjct 92655 TCGGCGACGAACTCGATGTATTGAGACATCAGACGACAGTTCATGCCAATCATGTCGACT 92714 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 || || | ||| ||| ||||| | |||||| |||||| || ||| |||| | Sbjct 92715 GGAAGTGCCTCTGTCAAGAACTCCTGCTCGATGCAGACGGCGTCCTTGATAATCT-CGAA 92773 Query 868940 GGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 868995 | ||| || | ||||||| ||||||| |||||| ||||| || ||||| Sbjct 92774 GATACGCTCCTGTGTTAGCTTGTTCTGAAGCATCGAGTAGAGAAGGCAAGCGAAGTC 92830 Score = 113 bits (124), Expect = 6e-19 Identities = 206/299 (69%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||| || ||| ||| || ||||||||||| || |||| |||||| |||||| Sbjct 67976 TACTCGGAGACACGCTTCTCAAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATG 67917 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| || || | ||||| |||| ||||||||||| ||| |||| | | Sbjct 67916 AAGTCGAATGGATTCTTCACATTGTACAGCTTGTCGCATCCGAGTTCCGCAAGCAAGTGA 67857 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 |||||||| ||||||||||| || |||| || | ||||||||| || | | || Sbjct 67856 TCGGCGACGAACTCGATGTATTGAGACATCAGACGACAGTTCATGCCAATCATGTCAACT 67797 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 || || | ||| ||| ||||||| ||||| |||||| || ||| |||| | Sbjct 67796 GGGAGTGCCTCTGTCAAGAACTCTTGTTCGATGCAGACGGCGTCCCTGATAATCT-CGAA 67738 Query 868940 GGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGC 868997 | ||| || | ||||||| ||||||| |||||| ||||| || ||||||| Sbjct 67737 GATACGCTCCTGTGTTAGCTTGTTCTGAAGCATCGAGTAGAGAAGGCAAGCGAAGTCGC 67679 Score = 105 bits (116), Expect = 8e-17 Identities = 118/156 (76%), Gaps = 9/156 (6%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || |||||||| || |||||||||||||| ||||| | | ||| || ||| ||| Sbjct 67581 CCTGGCATGAGTCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAACGATCCACTGAAGAAG 67522 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || ||||| ||||| ||| ||||||| || ||||| || ||| | ||| |||| Sbjct 67521 ATTCCTTCGACAGCGGCGAAGGCGATGAGACGTTCGGCGAA-----CGACG-CCTTCTTG 67468 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | |||||||||||| |||||||||||||| ||| Sbjct 67467 TCCGAGATCCACTTCATAGCCCAGTCGGCCTTCTTC 67432 >seq1032 Length=2756 Score = 113 bits (124), Expect = 6e-19 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||||| || || || |||||||| ||||| | || Sbjct 846 GCTTGGCGAGTTCTCCTGGAAGAATCAGACGGACAGCCGTCTGGATTTCGCGAGAAGAGA 787 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| |||||| | |||| || |||| | Sbjct 786 TGGTCGAACGCTTGTTGTAGTGAGCAAGACGAGAGGCCTCAGCAGCGATACGCTCGAAGA 727 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||||||||||||| ||||| | ||| ||||| || ||| |||| Sbjct 726 CGTCGTTGACAAACGAGTTCATGATGGACATGGCTTTGGAGGAGACTCCAGTGTCTGGGT 667 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 | || |||||||| || ||||||| | ||| ||||| || Sbjct 666 GAACTTGCTTGAGAACACGGTAGATGTA-GACAGAGTAGGA 627 >seq3667 Length=2326506 Score = 104 bits (114), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 1695303 GCTTGGCGAGCTCTCCTGGAAGAATCAAACGGACGGCCGTTTGAATTTCGCGGGAAGAGA 1695362 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| |||||||| | ||||||| |||| | Sbjct 1695363 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGAGGCCTCGGCGGCGATGCGCTCGAAGA 1695422 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| |||||| | |||| |||| || ||| || | Sbjct 1695423 CGTCATTGACGAACGAGTTCATGATCGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 1695482 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 1695483 GGACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 1695522 >seq3657 Length=1321725 Score = 104 bits (114), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 903646 GCTTGGCGAGCTCTCCTGGAAGAATCAAACGGACGGCCGTTTGAATTTCGCGGGAAGAGA 903705 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| |||||||| | ||||||| |||| | Sbjct 903706 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGAGGCCTCGGCGGCGATGCGCTCGAAGA 903765 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| |||||| | |||| |||| || ||| || | Sbjct 903766 CGTCATTGACGAACGAGTTCATGATCGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 903825 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 903826 GAACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 903865 Score = 100 bits (110), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || ||||| || || || ||||| | || Sbjct 910561 GCTTGGCGAGCTCTCCTGGAAGAATCAAACGGACGGCCGTTTGAATTTCGCGGGAAGAGA 910620 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| |||||||| | | ||||| |||| | Sbjct 910621 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGAGGCCTCGGCGGCAATGCGCTCGAAGA 910680 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| |||||| | |||| |||| || ||| || | Sbjct 910681 CGTCATTGACGAACGAGTTCATGATCGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 910740 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 910741 GGACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 910780 Score = 91.5 bits (100), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1254413 CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1254472 |||||| |||| || ||||| ||||||| | ||||||| |||| | ||| ||||| Sbjct 915091 CTTGTTGTAGTGAGCAAGACGAGACGCCTCGGCGGCGATGCGCTCGAAGACGTCATTGAC 915032 Query 1254473 AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1254532 ||||||||||||| |||||| | |||| |||| || ||| || || |||||||| Sbjct 915031 GAACGAGTTCATGATCGACATAGCCTTGGAAGAGACTCCAGTGTCTGGATGGACCTGCTT 914972 Query 1254533 GAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| || ||| ||| || ||||| || Sbjct 914971 GAGTACACGGTAAATGTACACAGAGTAGGA 914942 >seq3650 Length=1244161 Score = 104 bits (114), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||||| || || || |||||||| ||||| | || Sbjct 263975 GCTTGGCGAGTTCTCCTGGAAGAATCAGACGAACAGCCGTCTGGATTTCGCGAGAAGAGA 264034 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| |||||| | |||| || |||| | Sbjct 264035 TGGTCGAACGCTTGTTGTAGTGAGCAAGACGAGAGGCCTCAGCAGCGATACGCTCGAAGA 264094 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||||||||||||| ||||| | || ||||| || ||| || | Sbjct 264095 CGTCGTTGACAAACGAGTTCATGATGGACATGGCTTTAGAGGAGACTCCAGTGTCTGGAT 264154 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 | || |||||||| || ||||||| | ||| ||||| || Sbjct 264155 GAACTTGCTTGAGAACACGGTAGATGTA-GACAGAGTAGGA 264194 >seq3665 Length=2157650 Score = 100 bits (110), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || || ||||| || || ||||| | || Sbjct 994375 GCTTGGCGAGCTCTCCTGGAAGAATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGA 994434 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| ||||||| | ||||||| |||| | Sbjct 994435 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGA 994494 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| |||||| | |||| |||| || ||| || | Sbjct 994495 CGTCATTGACGAACGAGTTCATGATCGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 994554 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 994555 GAACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 994594 Score = 95.1 bits (104), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1254413 CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1254472 |||||| |||| || ||||| ||||||| | ||||||| |||| | ||| ||||| Sbjct 985120 CTTGTTGTAGTGAGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGACGTCATTGAC 985061 Query 1254473 AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1254532 ||||||||||||| |||||| | |||| |||| || ||| || || |||||||| Sbjct 985060 GAACGAGTTCATGATCGACATAGCCTTGGAAGAGACTCCAGTGTCTGGATGAACCTGCTT 985001 Query 1254533 GAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| || ||||||| || ||||| || Sbjct 985000 GAGTACACGGTAGATGTACACAGAGTAGGA 984971 Score = 86.0 bits (94), Expect = 8e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || || ||||| || || ||||| | || Sbjct 945700 GCTTGGCGAGCTCTCCTGGAAGAATCAAACGAACAGCGGTTTGAATTTCGCGGGATGAGA 945759 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| | || || ||||| ||||||| | | ||||| |||| | Sbjct 945760 TGGTCGATCTCTTGTTGTAATGAGCAAGACGAGATGCCTCGGCGGCAATGCGCTCGAAGA 945819 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| ||||| | |||| |||| || ||| || | Sbjct 945820 CGTCATTGACGAACGAGTTCATGATGGACATAGCCTTGGAAGAGACTCCAGTGTCTGGAT 945879 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 945880 GAACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 945919 >seq3263 Length=30027 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | |||||| || ||||| |||||||| || || | || Sbjct 5986 GCTTGGCGAGTTCTCCCGGAAGGATCAGACGAACGGCCGTCTGGATTTCACGAGACGAGA 6045 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | || || ||||| ||| |||| ||||||| |||| | Sbjct 6046 TTGTCGATCGCTTGTTGTAATGAGCGAGACGAGAGGCTTCGGCAGCGATGCGCTCGAAGA 6105 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| ||||| | || ||||| || ||| |||| Sbjct 6106 CGTCGTTGACGAACGAGTTCATGATTGACATGGCTTTCGAGGAGACTCCGGTGTCAGGGT 6165 Query 1254523 GCACCTG 1254529 | ||||| Sbjct 6166 GGACCTG 6172 >seq3588 Length=413572 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||| | ||||||||| || || ||| | |||||| |||| |||||| Sbjct 407223 GCTGCCAACTACTTGGACATCAAGGGACTTCTTGATGTCACCTGCAAGACTGTCGCCAAC 407164 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| || || || || |||||||| || || ||||||||| ||| Sbjct 407163 ATGATCAAGGGAAAATCTCCAGAAGAGATCCGTCGTACTTTCAACATCAAGAACG 407109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106838022613390