Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3658 127 2e-24 seq3663 123 2e-23 seq3618 105 6e-18 seq3660 100 3e-16 >seq3658 Length=1447888 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || |||||| | Sbjct 41240 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 41181 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || || ||| Sbjct 41180 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 41121 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || ||||| || ||||| |||||| | | | |||| || || ||| Sbjct 41120 CAACGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAAC 41061 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 41060 ATCCAAAAGGAGTCAACTCTTCA 41038 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || ||||| || |||||| | Sbjct 43705 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTCG 43646 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 43645 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 43586 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || || || || || |||||| | | |||| ||||| || Sbjct 43585 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACAAT 43526 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| ||||| |||||||| Sbjct 43525 ATCCAAAAGGAATCTACACTCCACTTGGT 43497 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || ||||| || ||||| | Sbjct 42471 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42412 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| ||||| ||||| Sbjct 42411 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 42352 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || || |||||| | | | || || || ||| Sbjct 42351 CAAAGACTCATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 42292 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || ||||| | ||| | || |||||| Sbjct 42291 ATCCAGAAAGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGGC 42244 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || |||||||| ||||| || ||||| || Sbjct 42927 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATTACCCTCGAGGTCGAAGCTTCC 42868 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||||||||| ||||| || || ||||| Sbjct 42867 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 42808 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || ||||| || || || |||||| | | | |||| || || || Sbjct 42807 CAGAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGACGGACCTTGTCGGACTACAAT 42748 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 42747 ATCCAAAAGGAGTCCACTCTTCA 42725 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || |||||||| ||||| || Sbjct 43477 ATGCAGATCTTCGTCAAGACTCTTACTGGAAAGACTATCACACTCGAAGTGGAAGCTTCC 43418 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||||||||||||| ||||| || || |||||| Sbjct 43417 GACACAATCGAGAACGTCAAGGCAAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAA 43358 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | | ||||| || || Sbjct 43357 CAAAGACTTATCTTCGCTGG 43338 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || ||||| || | || || || || || Sbjct 41468 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTGGAGGCTTCC 41409 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||||||||||||||| ||||| || || || || Sbjct 41408 GACACCATTGAAAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAG 41349 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||| | | ||||| || || || || || || || | || ||| | || || || || Sbjct 41348 CAAAGACTTATCTTCGCTGGAAAGCAACTCGAAGA-TGGACGTACACTCTCTGACTACAA 41290 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || |||||||| | || | || ||||| Sbjct 41289 CATCCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGTCTCCGTGGAGG 41242 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || |||||| | Sbjct 41970 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAAGCCTCT 41911 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| |||||||| |||||||| || || ||||| Sbjct 41910 GACACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAG 41851 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || || || || ||| | | | |||| || || ||| Sbjct 41850 CAGAGACTCATCTTCGCTGGAAAGCAACTCGAAGATGGACGCACCTTGTCGGACTACAAC 41791 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| ||||| || || Sbjct 41790 ATCCAGAAGGAGTCGACCCTTCA 41768 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || |||||||| ||||| || Sbjct 43202 ATGCAGATCTTCGTCAAGACTCTTACTGGAAAGACTATCACACTCGAAGTGGAAGCTTCC 43143 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||||||||||||| ||||| || || ||||| Sbjct 43142 GACACAATCGAGAACGTCAAGGCAAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 43083 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | | ||||| || || Sbjct 43082 CAAAGACTTATCTTCGCTGG 43063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| || || || || || || ||||| || ||||| | Sbjct 42699 ATGCAAATCTTCGTGAAGACGCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42640 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| ||||| || || || ||||| Sbjct 42639 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAG 42580 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| || || |||| | || || ||||| Sbjct 42579 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTCTCGGACTATAAT 42520 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 42519 ATCCAGAAGGAGTCCACTCTTCA 42497 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || ||||| || || | || || || || || Sbjct 43933 ATGCAAATCTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTGGAGGCTTCC 43874 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||||||||| ||||| || || ||||| Sbjct 43873 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 43814 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| || || |||| | || || || || Sbjct 43813 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTTTCGGACTACAAT 43754 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 43753 ATCCAGAAGGAGTCCACTCTTCA 43731 >seq3663 Length=2118579 Score = 123 bits (136), Expect = 2e-23 Identities = 354/536 (66%), Gaps = 19/536 (4%) Strand=Plus/Minus Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 || ||| ||| ||||||| |||||||||||||| | ||||| | ||| || || || Sbjct 1959004 CTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAGGAACAAGTCACGAGCACG 1958945 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTA-AGGAAATCAAAAACGTCAGCGTGCC 139516 || ||||| | || |||| | | || | | ||| || ||||| || || |||| Sbjct 1958944 CTCCTCTTCTGGTCCAGTGTT-CTTGCGGAGTGACACGAACTCGAAAACATCGGCATGCC 1958886 Query 139517 ATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTC 139573 |||| || || |||||||| | ||| ||| || ||| || ||||||||||| | | Sbjct 1958885 ATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCCTCCTTGATCGACATAAC 1958826 Query 139574 GTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGC 139633 | ||| |||||| | || || | ||| || || ||| ||| ||||||||| || | Sbjct 1958825 GAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTTCGATGTTCCGTTAGTTC 1958766 Query 139634 TACGGATG---GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGC 139690 | |||| | || | || || || | | || ||||||| |||||||| || Sbjct 1958765 CAGCGATGACAGAACCGGTG---GCACGAATCTTGTGGACATTGAGCCCGATTCCTCCAG 1958709 Query 139691 CAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCG 139749 | || || || | | | || | || | || || ||||| || || || || Sbjct 1958708 CGCTCTTCGAGATGAGAGCACACT-GCTTCAAAGTGTCGTAGATTCCAAGAATCGAATCC 1958650 Query 139750 TCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAAC 139809 || |||||| | || ||||| ||||| | ||| || | || || | || Sbjct 1958649 TCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGGCATGTTCCAGAGTTGAAG 1958590 Query 139810 AGAGTAGGACTCGCGTGCGTGAACATTT---GTTTCGACATCAATTCGTACGTTTCGATG 139866 ||||| ||| || || || ||| | | | |||||||| | |||||| |||||| Sbjct 1958589 AGAGTTGGAGAAGCATGAGT---CATGTAGCGCTCCGACATCAGATTGTACGTCTCGATG 1958533 Query 139867 GCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 || |||| ||| ||||||||| |||| ||| || ||||||| ||| ||||| Sbjct 1958532 GCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATCAACATCTGTTG 1958477 >seq3618 Length=512689 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || ||||| || ||||| || Sbjct 494953 ATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTCC 495012 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || | ||||| Sbjct 495013 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCAG 495072 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || || || || || |||||| | | | || || || ||| Sbjct 495073 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 495132 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| | ||| | || |||||| Sbjct 495133 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGGC 495180 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || ||||| || ||||| || Sbjct 509137 ATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTCC 509196 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || | ||||| Sbjct 509197 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCAG 509256 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || | || || || |||||| | | | || || || ||| Sbjct 509257 CAAAGACTCATCTTCGCTGAAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 509316 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| | ||| | || |||||| Sbjct 509317 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGGC 509364 >seq3660 Length=1640336 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| |||||||| |||||||| || ||| || Sbjct 486402 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 486343 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 486342 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 486283 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | ||||||| ||||| Sbjct 486282 CAAAGACTGATCTTCGCCGG 486263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449876960947600