Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_022057.1 Length=72108 Score E Sequences producing significant alignments: (Bits) Value seq1401 98.7 5e-16 >seq1401 Length=3734 Score = 98.7 bits (108), Expect = 5e-16 Identities = 116/152 (76%), Gaps = 10/152 (7%) Strand=Plus/Minus Query 13598 TTCACCAACGGCAGCCGCATCCTGTTCGGCGCCCGCGAGCGCGGCTTCGGCCGAGGCATC 13657 |||| |||||| ||| ||| ||||||| ||||||||| |||||||||||| ||| || Sbjct 1052 TTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTC 993 Query 13658 CCAGGCGTCGACGTGCTGATGTCCGACGAGGCGCAGATTCTCACC--CAACGCGCCATGC 13715 | || |||||||| || || |||| ||||||||||| ||| | ||| || || || Sbjct 992 GCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGC-CCTTG- 935 Query 13716 AGGACA---TGCTCGCCACCCTGAACACCTCG 13744 |||||| ||| ||||||| ||| ||||| Sbjct 934 AGGACATGGTGCCCGCCACC---AACGCCTCG 906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230610484764030