Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_022069.1 Length=55213 Score E Sequences producing significant alignments: (Bits) Value seq2028 95.1 4e-15 >seq2028 Length=10780 Score = 95.1 bits (104), Expect = 4e-15 Identities = 483/759 (64%), Gaps = 21/759 (3%) Strand=Plus/Minus Query 3283 AAGTGGCAGGTCGACCGTGATGAGCATGTTTACGGTGTGCCGGCGCAGGTGTTGCCGTAC 3342 ||||||||||| |||||| ||||||| | ||| ||||| | | || |||| Sbjct 4960 AAGTGGCAGGTGGACCGTTCGGAGCATGGGTGGCATGTCCCGGCTGACCCGCTGGTGTAC 4901 Query 3343 AAGCC---TGCGCCGAAGCGTCCGTTCGGGCAGTCTCGGATCACTAAACCCATGATGGGG 3399 ||||| | || |||||||| | |||| ||| || ||||| | ||| Sbjct 4900 AAGCCGCGTACGTCGAAGCGTATG---GGGCGGTCGCGCATCACGCGCGCGGCGATCTCA 4844 Query 3400 TTGCAGGACGCCGGGGTGCGTGAACTGGCCCGCCGCGAAGGCCACATGGATGTGTTCTCT 3459 ||| |||||| | | || ||||| | |||| ||||| |||||||| |||||| | Sbjct 4843 CACCAGTACGCCGCGCTTCGAGAACTTGTGCGCCTCGAAGCACACATGGACGTGTTCACG 4784 Query 3460 TATCCAG-AGTTTTGGCTGCTTGGCGCTGATGAGTCGGCGCTGAAAAACGCTGACGGAAC 3518 |||| | || | ||||| |||||| | || | | | || ||||| ||||| | Sbjct 4783 -ATCCCGCAGCTCATCCTGCTGGGCGCTAACGAAGCAATGTTCAAGAACGCAGACGGGTC 4725 Query 3519 GATAAAGTCGGTGTGGGAAGCCCGC-CTGGGCCGGATCAAGGGTCTCCCGGATGATGCTG 3577 | ||| || | | || || ||| || || || || | |||| || || | | Sbjct 4724 GTACAAGGCG-TCTTGGCAGATCGCTCTCGGGCGTGCGCTGGCTATCCCCGACGACGACG 4666 Query 3578 ATGCGGATATTCCGCAGCTTGCCCGTGCGGATGTGAAGCAGTTCCCCGCCGCGTCACCGG 3637 |||| | | | || || ||||| |||||||| || | || ||| |||| Sbjct 4665 ATGCTCCTGCTGGCTCGGATGGGCGCGCGGACGTGAAGCACATCGCTGCGCAGTCGCCGG 4606 Query 3638 ATGCGCATTGGTCTGACATCAATGGGTTGGCGAAACTGTTCGCCCGTGAGG-CGTCGCTT 3696 |||| | | |||| | ||||||||| || || || ||| || | || Sbjct 4605 CACCGCACCTCGCGGCGCTCAACGCGTTGGCGAAGCTCGAGGCGCGCGAGTACGAC-CTG 4547 Query 3697 CCGGATACGGCGGTGGCGATTTCTGGGTTGTCGAATCCGACGTCGGCTGAGTCGTATGAC 3756 || ||| ||| | ||||| | | || |||| ||||| ||| || ||||| Sbjct 4546 CCCGATTCGGATTTCGCGATGACGGACTTCGCGAACCCGACTGGGGCGGATTCGTACACG 4487 Query 3757 GCTTCGCAGTACGAGCTGATCGCTGAGGCTGAAGGCGCGGTGGATGATTTCACGCCGGCG 3816 || || | | | | ||||||| ||||| || |||||| ||||| | | | || Sbjct 4486 GCGTCTCGGGAGAACTTGATCGCCGAGGCGGAGGGCGCGACCGATGACTGGTCTGTGCCG 4427 Query 3817 CTGCGGAAGGCGTTCATTCGTGCTTTGGCGATGAAAAACAAGGTTGCGATCGACGAGATC 3876 | || || ||| | | |||||| |||| || | ||| || || || || Sbjct 4426 ATCCGCAACGCGGTGGTGCGTGCTCTGGCAATCCAGAACGGCGTGACG------GAAGTC 4373 Query 3877 CCCGATGAGTGGAAGTCGATCGATGCGAAGTGGCGGGATCCGCGGTATCTGTCGAAGTCG 3936 |||| ||| ||| ||||||||| |||||||||| |||| ||||||||||||| | Sbjct 4372 CCCGCTGATTGGGCGTCGATCGACACGAAGTGGCGTTCTCCGATGTATCTGTCGAAGGCC 4313 Query 3937 GCGCAGGCTGATGCGGGTATGAAGCAGTTGGCGGC-GGTGCCG--TGGCTTGCGGAGACC 3993 || || |||||||| ||||||| | || | ||| | | ||| | ||| || Sbjct 4312 GCCGTCGCAGATGCGGGCGCGAAGCAGGTCTCGTCTGGTCCTGACTGGTTGAAGGACACT 4253 Query 3994 GAGGTCGGTTTGGAACTGATCGGTTTGACACCCCAGCAG 4032 |||||| ||||| || |||| |||||| |||||| Sbjct 4252 CGCGTCGGTATGGAAATGCTCGGCATGACACAGCAGCAG 4214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176552305294500