Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_022325.1 Length=69815 Score E Sequences producing significant alignments: (Bits) Value seq1401 96.9 2e-15 >seq1401 Length=3734 Score = 96.9 bits (106), Expect = 2e-15 Identities = 112/146 (77%), Gaps = 10/146 (7%) Strand=Plus/Minus Query 13780 AACGGCAGCCGCATCCTGTTCGGCGCCCGCGAGCGCGGCTTCGGCCGAGGCATCCCAGGC 13839 |||||| ||| ||| ||||||| ||||||||| |||||||||||| ||| || | || Sbjct 1046 AACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGT 987 Query 13840 GTCGACGTGCTGATGTCCGACGAGGCGCAGATTCTCACC--CAACGCGCCATGCAGGACA 13897 |||||||| || || |||| ||||||||||| ||| | ||| || || || |||||| Sbjct 986 GTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGC-CCTTG-AGGACA 929 Query 13898 ---TGCTCGCCACCCTGAACACCTCG 13920 ||| ||||||| ||| ||||| Sbjct 928 TGGTGCCCGCCACC---AACGCCTCG 906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223273212961120