Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3658 140 2e-28 seq3618 125 5e-24 seq3660 84.2 1e-11 >seq3658 Length=1447888 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| ||||||||| ||||| |||||||| | | |||| |||| Sbjct 41759 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGTCCATCT 41818 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||| |||| ||||| ||| | || | || |||||||| Sbjct 41819 TCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 41878 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | ||| ||| ||||| |||| || |||||| Sbjct 41879 TGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACCTCAAGAGTGATGGTC 41938 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || ||||||||||| Sbjct 41939 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 134 bits (148), Expect = 9e-27 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| |||||||| | | | || |||| || || |||||||||||||| Sbjct 41049 CTCCTTTTGGATGTTGTAGTCCGACAAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAA 41108 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||||| |||||| | || | ||| |||||||| | || || |||||| Sbjct 41109 AATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 41168 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| ||| ||||| || | ||| ||||||||||| ||||||||||| || Sbjct 41169 CTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 41228 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 41229 GAAGATCTGCAT 41240 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||||||| ||||| ||||| || || | || |||| Sbjct 41257 AGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCT 41316 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||| |||| |||||||||| | || | ||||| ||||| Sbjct 41317 TCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCT 41376 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || ||||| || || | || || ||| Sbjct 41377 TGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACCTCCAAAGTGATAGTC 41436 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || ||||| ||||| Sbjct 41437 TTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 41468 Score = 120 bits (132), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| ||||||||| || ||||||||||| || | | | || Sbjct 42488 AGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCT 42547 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||| |||| ||||| ||| | || | ||| |||||||| Sbjct 42548 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCT 42607 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || |||||| || || || | ||| || || || || | ||| |||| Sbjct 42608 TGGATCTTGGCTTTGAC--ATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGG 42665 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||||| ||||| || ||||| ||||| Sbjct 42666 TCTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | |||| ||| ||||| ||||| ||||| || || | || |||| Sbjct 42260 AGGACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCC 42319 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| |||| |||||| ||| | || | || |||||||| Sbjct 42320 TCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTGTCT 42379 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| || || || || | ||| |||||| Sbjct 42380 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTC 42439 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || ||||| ||||| Sbjct 42440 TTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| |||||| || || || |||||||| | | | || |||| Sbjct 42716 AGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGACAAGGTCCGTCCATCC 42775 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||||||||| || |||| ||||| ||| | || | ||||| ||||| Sbjct 42776 TCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 42835 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||||| || | ||| || ||| Sbjct 42836 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTC 42895 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || ||||||||||| Sbjct 42896 TTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 42927 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||| | || ||||| || || || || || | Sbjct 43477 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGG 43536 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | || |||| || ||||||||||| |||||||| |||| |||||| ||| | | Sbjct 43537 ACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTG 43596 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || |||||| | || | || ||| || | Sbjct 43597 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAA 43656 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 43657 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 Score = 102 bits (112), Expect = 5e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || || || |||| ||| ||||||||| || || ||||||| Sbjct 43705 TTCCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCG 43764 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || || || ||||||||||||||||| |||| ||||| ||| | | Sbjct 43765 AAAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 43824 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||| ||||| | || || |||||| || || || | || ||||| Sbjct 43825 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGAC--ATTCTCAATGGTGTCGGAAGCCTC 43882 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || | ||| ||||| ||||| || | || || || ||||| |||||||| Sbjct 43883 CACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCATGAT 43936 >seq3618 Length=512689 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | |||| ||||||||| ||||| ||||| || || | || |||| Sbjct 495164 AGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCC 495105 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||| |||| |||||| ||| || | || |||||||| Sbjct 495104 TCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCT 495045 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||||| || | ||| |||||| Sbjct 495044 TGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTC 494985 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || ||||| ||||| Sbjct 494984 TTTCCGGTGAGGGTCTTCACGAAGATTTGCAT 494953 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | |||| ||||||||| ||||| ||||| || || | || |||| Sbjct 509348 AGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCC 509289 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||| | |||||||| |||| |||||| ||| || | || |||||||| Sbjct 509288 TCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCT 509229 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||||| || | ||| |||||| Sbjct 509228 TGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTC 509169 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || ||||| ||||| Sbjct 509168 TTTCCGGTGAGGGTCTTCACGAAGATTTGCAT 509137 >seq3660 Length=1640336 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 |||||||||||||||| |||||| ||| | || | || |||||||| | || || Sbjct 486263 CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 486322 Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 ||||| || || || | || ||||||||| || | ||| || ||||| ||||| | Sbjct 486323 TTGAC--ATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCA 486380 Query 34956 GGGTCTTTACAAAGATCTGCATGA 34979 | ||||| || ||||| ||||||| Sbjct 486381 GAGTCTTGACGAAGATTTGCATGA 486404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325678232371730