Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq1868 740 0.0 seq3622 358 2e-94 >seq1868 Length=6173 Score = 740 bits (820), Expect = 0.0 Identities = 412/413 (99%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 35183 GCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT 35242 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 GCGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT 354 Query 35243 GGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG 35302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 GGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG 294 Query 35303 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACT 35362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACT 234 Query 35363 GCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCAT 35422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 GCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCAT 174 Query 35423 GAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTT 35482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 GAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTT 114 Query 35483 ACGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAC 35542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 ACGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAC 54 Query 35543 GTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATC 35595 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 GTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATC 1 >seq3622 Length=753369 Score = 358 bits (396), Expect = 2e-94 Identities = 334/422 (79%), Gaps = 2/422 (0%) Strand=Plus/Plus Query 35533 GGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAA 35592 |||||| || |||| |||| ||||||||||||||||| |||| ||||| ||||| | Sbjct 558956 GGGCAGCGAAATCATAATCTGTGCGGAAATGGACGAACAAAGGGGTTATGTGTGGGCTTA 559015 Query 35593 ATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCA 35652 || |||||||||| || ||||||| | |||||||||||||||||||||| | | ||||| Sbjct 559016 ATAGCGCCAGCGCCGGGTGTTTTATGTTTATGACAGTCTCCGGAAGACGGGTTTCGCGCA 559075 Query 35653 CGTATTCGGT-GAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCT 35711 ||||| | | | ||||| ||| |||| ||| | | || || || | |||||| | Sbjct 559076 TGTATTTGTTTGTACGCATAATGAAGACGGTGGAGTATTTTGTGCGCTGGGAGTCACCTT 559135 Query 35712 TTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCC-CGCCTGAAGGGA 35770 || | |||| ||||||| || ||||||| |||||||| |||||||||||| Sbjct 559136 TTTATCCAATGATTTGGATGATACATCATTGGCCGCACTATGAATCAGCGCCTGAAGGGA 559195 Query 35771 AAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTAAATCTG 35830 |||||||||||| ||||||||||||||| |||| || | |||||| ||| Sbjct 559196 AAGCTGCACGTACTCAGCAAGCGATATAAGCAGGCAAACCAAAAAATTAACCTGAATTAA 559255 Query 35831 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTG 35890 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 559256 AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTTTCAAACTCGGTGGAGTTG 559315 Query 35891 CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATT 35950 |||||||||||||| | ||| ||| |||||||||||| | ||||||| |||| |||||| Sbjct 559316 CATGACAAAGTCATTGAGCAGAATCAGAACATAAAACAGTCTCAATAATTTGGTGTCATT 559375 Query 35951 AC 35952 || Sbjct 559376 AC 559377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127098460648800