Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_022972.2 Length=37372 Score E Sequences producing significant alignments: (Bits) Value seq1401 156 1e-33 seq2028 89.7 1e-13 >seq1401 Length=3734 Score = 156 bits (172), Expect = 1e-33 Identities = 417/618 (67%), Gaps = 16/618 (3%) Strand=Plus/Minus Query 372 GCTGTTTGAGTCTGCCCGGCATGTGATCGTCCCTGAG-GGGATCGTGTCGACTGGGTGGC 430 ||| | |||| ||| |||| || || | || ||| |||||||||||||| || |||| Sbjct 1452 GCTATCTGAGGTCGCCAAGCATCTGGTCCTGCC-GAGTGGGATCGTGTCGACCGGCTGGC 1394 Query 431 CTGCGGTGAGGGACACTCTTGGCAAGTTGGGCATTACGTTT-GATTCCTGGCAG-CAGGG 488 | |||||| ||||| ||||| ||||| | ||| || |||||| |||| Sbjct 1393 CCGCGGTGCGGGACCAGTGCCGCAAGATGGGCGTC-CGTCACGACGAATGGCAGGCAGGC 1335 Query 489 CGCTTCACAGCTGATCCTGTCCAAGGATGAGAACGGCTTGTATGCGACCACCGTGGGCGG 548 | | || ||| || ||||| | | ||| |||| || || | | ||||| Sbjct 1334 CTCGGGCGCGC-GATGCTCGCCAAGCGCGCCAGCGGACTGTACGCCGCCGGCATCGGCGG 1276 Query 549 CGTGACGATCAGCATCCCTCGGCAGGTCGGTAAGACGTTCATGATCGGGTGGATCGTCTT 608 | | | ||| ||| || |||||||| |||||||||| ||||||| |||| |||| Sbjct 1275 CATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTT 1216 Query 609 CGCCCTCTGCATCATCTACCCGGGCTTGACCGTTGTTTGGACGGCTCACCGGGCCTCTAC 668 ||||||||||||||||| |||| | || || | ||||| || |||| || || Sbjct 1215 CGCCCTCTGCATCATCTTCCCGAAGCTCACGGTCATCTGGACCGCGCACCACTCCCGCAC 1156 Query 669 CGCTGATGAGACGTTCGA-TGGCATGAAGTCGATGGCCGCGTCGCCGACGATGGCGCCGC 727 | | | ||||||||||| | || || || | ||| | || || | |||| |||| Sbjct 1155 CTCCAACGAGACGTTCGAGTCGC-TGCAGGGCTTCGCCCAGAAGCGGAAGGTGGCCCCGC 1097 Query 728 ACAT-TGACCG-TACGCCG-GACAACGGCAGCGAGCAGAAGATTGAGTTCAAGAACGGCT 784 | || | | | | ||||| | ||||| || ||||| |||| ||||||||||||| Sbjct 1096 ATATCCGGCAGATCCGCCGAGTGAACGG--GC-AGCAGCAGATCACCTTCAAGAACGGCT 1040 Query 785 CTCGTGTGGTGTTCGGCGCCCGTGAGCGCGGTTTCGGGCGAGGCTTCACGAAGCTCGACA 844 | || | ||||||| ||||| ||| ||| ||||| || |||||| | ||||| Sbjct 1039 CCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACG 980 Query 845 TTGTCGTCTTTGACGAGGCGCAGATCCTCACGGAAC-GCTCCATCGACGACATGATCCCG 903 | || || || ||||||||||||||| | ||| || | || |||||| | || Sbjct 979 TCGTGGTGGCCGATGAGGCGCAGATCCTC-GGCAACAAGGCCCTTGAGGACATGGTGCCC 921 Query 904 GCGCAGAACGCCTCTGGCAACGCGCTGACGATCATGATTGGGACGCCGCCGAAGCCGATC 963 || |||||||| ||| |||| | ||| |||| || || ||||| || || Sbjct 920 GCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCGCCCAGTC 861 Query 964 GACCCCTCGGAAGTGTTC 981 |||||| |||| |||| Sbjct 860 GACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 89.7 bits (98), Expect = 1e-13 Identities = 152/213 (71%), Gaps = 17/213 (8%) Strand=Plus/Minus Query 755 GCGAGCAGAAGATTGAGTTCAAGAACGGCTCTCGTG-TGGTGTTCGGCGCCCGTGAGCGC 813 ||||||| |||| |||| |||||| |||| | |||||||||| |||||| || Sbjct 6633 GCGAGCAAGAGATCCGGTTCCGCAACGGCAG-CGTGATCATGTTCGGCGCTCGTGAGGGC 6575 Query 814 GGTTTCGGGCGAGGCTTC-ACGAAGCTCGACATTGTCGTCTTTGACGAGGCGCAGATCCT 872 || |||||||| |||||| |||| | ||||||| | ||||| || |||||||||||||| Sbjct 6574 GGGTTCGGGCGTGGCTTCGACGAGG-TCGACATCGAGGTCTTCGATGAGGCGCAGATCCT 6516 Query 873 CAC--GGAACGCTCCATCGACGACATGATCCCGGCGCAGAACGCCTCT-GGCAA------ 923 || ||| || | | || |||||| || | ||| |||| ||| ||||| Sbjct 6515 GACCGAGAAGGCGC--TGGAAGACATGGTCGCAGCGACGAACCAGTCTCGGCAAAAGTCG 6458 Query 924 --CGCGCTGACGATCATGATTGGGACGCCGCCG 954 ||||||| | || | || || ||||| ||| Sbjct 6457 GGCGCGCTGCTGTTCTTCATGGGCACGCCCCCG 6425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119463593400360