Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3658 86.0 5e-12 >seq3658 Length=1447888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| || || || |||||||| ||| | || ||||||| | Sbjct 43933 ATGCAAATCTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTGGAGGCTTCC 43874 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||||| || ||||| || | || |||||| Sbjct 43873 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 43814 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | || || || ||||| || |||| | ||| | |||||||||| Sbjct 43813 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTTTCGGACTACAAT 43754 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 43753 ATCCAGAAGGAGTCCAC 43737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398858958988630