Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3658 114 1e-20 seq3618 96.9 3e-15 >seq3658 Length=1447888 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | |||||| ||||| || ||||| || || || |||| Sbjct 42701 CCTCCACGAAGACGGAGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGAC 42760 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| |||||||| || || || | || | ||| |||||||| || || Sbjct 42761 AAGGTCCGTCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGG 42820 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||| | || | || || ||| ||| || Sbjct 42821 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACC 42880 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || ||||| || ||||| | ||| || || || ||||||||| Sbjct 42881 TCGAGGGTAATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 42928 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| || || || || || ||||| || || | Sbjct 41242 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 41301 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| |||||||| || ||||| | || | ||||||||| || || || Sbjct 41302 AGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 41361 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||||| |||| | ||||| ||| || || Sbjct 41362 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACC 41421 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| ||||| || || || | || || || || || |||||| Sbjct 41422 TCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 41469 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||||||| || ||||| ||||| || ||||| || || | || || || | Sbjct 42257 CGGAGGACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA 42316 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || |||||| | || | |||||||||||| || || || || || ||| Sbjct 42317 TCCTCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTG 42376 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | ||||||||| ||| || || || || || Sbjct 42377 TCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATG 42436 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || || || || ||||| Sbjct 42437 GTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||| || || || ||||| ||||| || || ||||| | Sbjct 43478 TCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGA 43537 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || ||||| || ||||| | || | |||||||||||| || || Sbjct 43538 CAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGG 43597 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || |||||||| | || ||||| | || | ||||| || ||| || Sbjct 43598 AATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAAC 43657 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || ||||| | ||| || || || || |||||| Sbjct 43658 CTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || || | |||||| ||||| || || || || || || |||| Sbjct 43706 TCCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGA 43765 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | || || || || || || || | || | ||| |||||||| || || Sbjct 43766 AAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGG 43825 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||||||||| | || ||||||| | || | ||||| ||| || || Sbjct 43826 GATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCAC 43885 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| ||||| || ||||| || || || ||||| Sbjct 43886 CTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 ||||| | || | |||||||||||| || || || |||||||||||||| | ||| Sbjct 43063 CCAGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43122 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 ||||| | || | ||||| ||| ||| ||||| || || ||||| || ||||| | Sbjct 43123 TTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGA 43182 Query 29767 GTTTTAACAAATATCTGCATT 29787 || || || || ||||||||| Sbjct 43183 GTCTTGACGAAGATCTGCATT 43203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 ||||| | || | |||||| ||||| || || || |||||||||||||| | ||| Sbjct 43338 CCAGCGAAGATAAGTCTTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43397 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 ||||| | || | ||||| ||| ||| ||||| || || ||||| || ||||| | Sbjct 43398 TTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGA 43457 Query 29767 GTTTTAACAAATATCTGCATT 29787 || || || || ||||||||| Sbjct 43458 GTCTTGACGAAGATCTGCATT 43478 >seq3618 Length=512689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||||||| || ||||| || || || ||||| || || | || || || | Sbjct 495167 CGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA 495108 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || ||||| | || | |||||||||||| | || || || || ||| Sbjct 495107 TCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTG 495048 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| ||| ||| || || || || || Sbjct 495047 TCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATG 494988 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || | ||| || || || || |||||| Sbjct 494987 GTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 494952 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||||||| || ||||| || || || ||||| || || | || || || | Sbjct 509351 CGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA 509292 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || |||| | || | |||||||||||| | || || || || ||| Sbjct 509291 TCCTCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTG 509232 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| ||| ||| || || || || || Sbjct 509231 TCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATG 509172 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || | ||| || || || || |||||| Sbjct 509171 GTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 509136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385201969867470