Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023498.1 Length=62466 Score E Sequences producing significant alignments: (Bits) Value seq1401 134 6e-27 seq2028 111 6e-20 >seq1401 Length=3734 Score = 134 bits (148), Expect = 6e-27 Identities = 284/416 (68%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 1741 GCCAAGCGATCCGACGGGCTGTACGCCGCTGACATGTTCGCCATG------TCGGT--GC 1792 |||||||| || ||| ||||||||||| | ||| || ||| ||| | || Sbjct 1316 GCCAAGCGCGCCAGCGGACTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGC 1257 Query 1793 CGCGGCAGACAGGCAAGACGTACTTCCTCGGCGCCCTGGTGTTCGCGCTGTGCAAGATGA 1852 ||| ||| |||||||||| | | |||| | | | ||||| || |||| || Sbjct 1256 CGC--CAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCT 1199 Query 1853 ATCCCG--GCACAACGGTGATCTGGACTGCGCACCGCACCCGCACGGCCGCCGAGACGTT 1910 ||||| || || |||| |||||||| ||||||| | ||||||| || ||||||||| Sbjct 1198 -TCCCGAAGCTCA-CGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTT 1141 Query 1911 CAAGTCTATGCAGGCCCTCGCCAAGC-GCGAGCAGATCGCCCCGCACGTCGCCAACGTCC 1969 | |||| |||||| | ||||| || ||| | || | |||||||| || | ||| Sbjct 1140 CGAGTCGCTGCAGGGCTTCGCCCAGAAGCG-GAAGGTGGCCCCGCATATCCGGCAGATCC 1082 Query 1970 ACACGGGCAACGGCAAAGAGGCCGTGCTGTTCGTCAACGGTTCACGAATCCTGTTCGGCG 2029 | | ||||| | || | ||| ||||| || || ||| ||||||| | Sbjct 1081 GCCGAGTGAACGGGCAGCAGCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTG 1022 Query 2030 CCCGTGAGAAGGGGTTCGGCCGAGGGTTCGCCAAGGTCGACGTTCTGATTTTCGATGAGG 2089 |||| ||| || |||||||| || |||||| |||||||| || | |||||||| Sbjct 1021 CCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGG 962 Query 2090 CGCAGATTCTCACCGAAAACGCGATGGACGACATGATCCCCGCGACGAACGCCTCG 2145 ||||||| ||| | | || || | || |||||| | ||||| || ||||||||| Sbjct 961 CGCAGATCCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCG 906 >seq2028 Length=10780 Score = 111 bits (122), Expect = 6e-20 Identities = 145/199 (73%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 2017 ATCCTGTTCGGCGCCCGTGAGAAGGGGTTCGGCCGAGGGTTCGCCAAGGTCGACGTTCTG 2076 ||| |||||||||| |||||| |||||||| || || |||| | |||||||| | | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 2077 ATTTTCGATGAGGCGCAGATTCTCACCGAAAACGCGATGGACGACATGATCCCCGCGACG 2136 | ||||||||||||||||| || ||||| || ||| |||| |||||| || | |||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 2137 AAC--GCCTCGCCTAA----CGGCCTGATCCTGTTCGCC---GGTACGCCGCCGAAACCT 2187 ||| | |||| | || ||| | | |||||| | || ||||| ||| | Sbjct 6478 AACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCCCCCGCGGGCG 6419 Query 2188 ACTGACCCCGGCGAGGTGT 2206 ||||| || ||||||| || Sbjct 6418 ACTGATCCTGGCGAGGAGT 6400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199757464823490