Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023604.1 Length=44306 Score E Sequences producing significant alignments: (Bits) Value seq2028 138 3e-28 seq1401 138 3e-28 >seq2028 Length=10780 Score = 138 bits (152), Expect = 3e-28 Identities = 450/693 (65%), Gaps = 61/693 (9%) Strand=Plus/Minus Query 682 TCGATCCCGCGGCAGGTCGGGAAGACCTACCTGATCGGCTGTATCGTCTTCGCGCTCGCG 741 || ||||| || ||||| || ||||| | ||| ||||| ||| || ||||||| | | Sbjct 6844 TCAATCCCTCGACAGGTTGGTAAGACATTCCTAGTCGGCATGATCATCATCGCGCT-GTG 6786 Query 742 C-TGCTGACGCCGGGGCTCACCGTGATTTGGACGGCGCACCGGACGAAGACGGCGAAGGA 800 | | ||||||||| |||||||||| | ||||| ||||| || |||||||| || | | | Sbjct 6785 CATTCTGACGCCGAGGCTCACCGTCTTGTGGACAGCGCATCGCACGAAGACAGCAACGAA 6726 Query 801 AACGTTCGCGTCCATGCGGGCGATGTGCGAAAACCCG------CTGGTCAAGCG-GCACG 853 || ||| | |||||| || ||| | | || | | || | | | || | Sbjct 6725 GACCTTCCAGACCATGCAGGGCATGGTCAAGAAGAAGAAGATTCGGGGCCACCTTGCTCC 6666 Query 854 TG-----AAGGACGTCGTGCTGGCGC-GC----GGCGACGAGGGTATCTACCTCAAGAAC 903 || || |||| || | || | || ||||| | | ||| || ||| Sbjct 6665 TGGCCGCAATGACG--GTATTCGCACAGCCAATGGCGAGCAAGAGATCCGGTTCCGCAAC 6608 Query 904 GGCTCGCGC-ATCATGTTCGGCGCTCGCGAGAACGGCTTCGGGCTCGGCTTCGCGAAGGT 962 ||| ||| ||||||||||||||||| ||| ||| ||||||| ||||||| |||| Sbjct 6607 GGCA-GCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGT 6549 Query 963 CGGCGTCCTGGTGCTCGACGAGGCGCAGCGACTCACGTCCAAAGCAATGGACGACCTGAT 1022 || | || ||| |||| ||||||||| || || || || |||| ||| || | Sbjct 6548 CGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGT 6489 Query 1023 CCCGACGATGAAC-ACCGTCGAGAA--------CCCGCTTGTGCTGCTCACGGGTACGCC 1073 | | ||| |||| | ||| || | |||| || | ||| ||| ||||| Sbjct 6488 CGCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCC 6429 Query 1074 ACCGCGGCCGACGGACGCCGGCGAAGTGTTCACGATGCTTCGGCAAGACGCGCTCGAC-- 1131 |||||| |||| || | ||||| | || | || || | || ||||| || Sbjct 6428 CCCGCGGGCGACTGATCCTGGCGAGGAGTGGCTGGAGCGCCGCAATGATGCGCTTGAGAT 6369 Query 1132 ----------------------GGCGAATCGGAAGGCACGCTGTACGTCGAGTTCTCCGC 1169 ||| ||||| | ||| |||||||||||||||| || Sbjct 6368 CAAGCCGATGGATCAGGTTGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTCTCGGC 6309 Query 1170 GGACCGCGACGCGAACCCGGACGATCGGGCGCAGCTGCGGAAGGCGAACCCGTCGTATCC 1229 |||| |||||| |||||||||| || || || |||||| || || |||| ||| Sbjct 6308 GGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCGAAGGCCAATCCTTCGTTTCC 6249 Query 1230 GCACCGGACCAGCGAGCGCG-CGATCCGGCGTATGCGGAAGAACCTC---ACCGAGGACT 1285 ||||| ||| || || | || || ||| ||||||||||||||| | |||||||| Sbjct 6248 ACACCGCACC-CCGCTCGAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAACGAGGACT 6190 Query 1286 CGTTCCTCCGCGAGGCGTTCGGTATCTGGGACG 1318 ||||| || |||||| | || |||| |||| Sbjct 6189 CGTTCAAGCGTGAGGCGATGGGCATCTATGACG 6157 Score = 120 bits (132), Expect = 9e-23 Identities = 791/1253 (63%), Gaps = 52/1253 (4%) Strand=Plus/Minus Query 2085 CTCTACGACGGCAAGTACGTGATCGACCAGATCGGCGAAATCATCCCGCCGACCTACCTT 2144 || || ||||| ||| || | || |||| |||| |||||||| ||| |||| Sbjct 5413 CTGTATGACGGGAAGAGCGCGCTCCGCCAGGTCGGGACCATCATCCCTCCGCAGTACCAC 5354 Query 2145 CGGACGGCGACCGTGCTCGGCTGGTCGGCGAAGACGGTCGACACGCTCGCGCGTCGCTGC 2204 ||| || | |||||| ||| | |||||| ||||| |||||| ||||||||| Sbjct 5353 CGGCTGGGCCTTGCGCTCGGGTGGGCCGCGAAGGGCGTCGATGGGCTCGCCCGTCGCTGC 5294 Query 2205 AATCTCGAAGAGTTCATTTGGACCGACGGCCGCACCACCGACGATTCCGGCCTGTCCGAG 2264 | ||||| || | ||||| | | ||| | | | || | ||| | | ||| Sbjct 5293 ACGCTCGATGACATGGTTTGGGCGAATGGC-GATCTCGGGTCGCT--CGGGTTCGCTGAG 5237 Query 2265 GTCTGGGACGAGAACTTCTTCGCCACGAAGTCGAACATGTCGATGGT-----CTC-TTCG 2318 | ||||| ||||||| || | |||| | ||||| || || ||| Sbjct 5236 CTGCGGGACTCGAACTTCCTC------ATGTCGGAGCTGTCGCAGGCACGCACTGATTCC 5183 Query 2319 CTGATGCACGGGCCGGCGTGGCTGATCAACACGACGGGCGGCGCCGGCGAACCGGACTCG 2378 ||| ||||||| ||| ||||||| ||||| ||| | | | || ||| | Sbjct 5182 CTGCTGCACGGCGTTTCGTACCTGATCACCACGAAGGGTGATGAGGATGAGCCGCGAGCT 5123 Query 2379 CTCATCCACGTGAAGAGTGCCCTTCACGCAACGGGCGACTGGAACGCGCGC---CGGAAC 2435 || || |||| |||| ||||| |||| || || || |||||| ||| ||| | Sbjct 5122 CTGATTCACGCGAAGGACGCCCTGAACGCGACTGGTGAGTGGAACAACCGCAAGCGG--C 5065 Query 2436 GCGATGGACAACTTGCTCTCGATCACCGACCGCGACG---ACAAGGGCAACCCGTCGGCG 2492 || |||||||| |||| ||| | || | || | || ||||| || | || Sbjct 5064 GCC-TGGACAACCTGCTGTCGGTGACAGCGCGGGCCGGGAACAAGATCACCGGGT----- 5011 Query 2493 ATCGCGCTGTACCAGGACGGCATCACCGTGACGTCGCAGCTGAACGCGCGAACGGGCGTC 2552 ||| ||||||| ||||| | ||||||| || | || || ||| | Sbjct 5010 -TCGTCCTGTACCTCGACGGGGTAACCGTGAACGCGGATCTTGTCGATGGAAAG------ 4958 Query 2553 TGGGAATCGGACTACTCGACGCACGGGCTCGGCGTG--CCGGTCGAACTGATGCCGTACA 2610 ||| | |||| ||| ||| ||| ||| || |||| || | | || ||||| Sbjct 4957 TGGCAGGTGGACCGTTCGGAGCATGGGT--GGCATGTCCCGGCTGACCCGCTGGTGTACA 4900 Query 2611 AGCCGCGCGAGGACCGGGCGTACGGGTCGAGC-CGGATCAGCCGGCCGATTATCTCGATC 2669 ||||||| | | | ||||| ||| || | || |||| || || ||||| | Sbjct 4899 AGCCGCGT-ACGTCGAAGCGTATGGGGCGGTCGCGCATCACGCGCGCGGCGATCTCACAC 4841 Query 2670 CAGAAGCGCGCGCTGAAAGCGATCGTCCGCATGGACGGTCACGCCGACGTGTACTCGTTC 2729 ||| | |||||| || | || ||| | || | ||| ||||||| | || || Sbjct 4840 CAGTACGCCGCGCTTCGAGAACTTGTGCGCCTCGAAGCACACATGGACGTGTTCACGATC 4781 Query 2730 CCTCAGCTGATCTTGCTCGGCGCGTCCGGCTCGGCGTTCAAGAACGCCGACGGCTCGCTT 2789 || ||||| ||| |||| ||||| || | |||||||||||| ||||| ||| Sbjct 4780 CCGCAGCTCATCCTGCTGGGCGCTAACGAAGCAATGTTCAAGAACGCAGACGGGTCGTAC 4721 Query 2790 AAGCCGGCGTGGCGGGTGGCGCTCGCGCGCGTCTTCGCGCTCGAAGACGACAAGGACGAG 2849 ||| || | |||| | | || |||| ||| | | || || |||||| | || | Sbjct 4720 AAGGCGTCTTGGCAGATCGCTCTCGGGCGTGCGCTGGCTATCCCCGACGACGACGATGCT 4661 Query 2850 CCCGACG-CGCG-ACGGGCCCGCGCGGACGTGAAGCAATTCCCGGCGTCGAGCCCGGAAC 2907 || | | | || | |||| |||||||||||||||| || | ||| | |||| || Sbjct 4660 CCTGCTGGCTCGGATGGGC--GCGCGGACGTGAAGCACATCGCTGCGCAGTCGCCGGCAC 4603 Query 2908 CGCATATCAAGATGATTGAGCAGATCGCGCAGATGTTCTCGGGCGAGT-CGTCGATCCCG 2966 |||| || | | | | | | ||| || | || |||||| || | |||| Sbjct 4602 CGCACCTCGCGGCGCTCAACGCGTTGGCGAAGCTCGAGGCGCGCGAGTACGACCTGCCCG 4543 Query 2967 GT-CGAATCGCTCGGCTTCACCAACCACGCGAACCCGACGTCGCCGGACGCGTACGTTGC 3025 | || || | || | || || |||||||||||| | |||| ||||| || Sbjct 4542 ATTCGGATTTCGCGA--TGACGGACTTCGCGAACCCGACTGGGGCGGATTCGTACACGGC 4485 Query 3026 CGCTCGCGAAGACCTGATCGCCGAGGCCGAAGGCGCGATCGACGACTGGAAGCAAGCGAT 3085 |||| || || ||||||||||||| || ||||||| ||| |||||| |||| Sbjct 4484 GTCTCGGGAGAACTTGATCGCCGAGGCGGAGGGCGCGACCGATGACTGGTCTGTGCCGAT 4425 Query 3086 GCGCCGGTCGATGATCCGCGCGCTCGCGATCAAGAACGGGCTCGACTCGA-TCCCGGCCG 3144 ||| || || | || || || || ||| ||||| ||| ||| | |||| || | Sbjct 4424 CCGCAACGCGGTGGTGCGTGCTCTGGCAATCCAGAAC-GGCGTGACGGAAGTCCCCGCTG 4366 Query 3145 AGTACGCAGCGCTCGAACCGAAGTTCCGACCGCCGATCTACCTGTCGAAGTCCGCGCAGG 3204 | | || || |||| |||||| || | ||||| || ||||||||| |||| | Sbjct 4365 ATTGGGCGTCGATCGACACGAAGTGGCGTTCTCCGATGTATCTGTCGAAGGCCGCCGTCG 4306 Query 3205 CGGACGCCGGCTCGAAGATGCTCGGCGCGGGCCCGGAATGGCTCAAGGAGACGTCCGTCG 3264 | || || ||| ||||| | || | || || || ||| | ||||| || ||||| Sbjct 4305 CAGATGCGGGCGCGAAGCAGGTCTCGTCTGGTCCTGACTGGTTGAAGGACACTCGCGTCG 4246 Query 3265 GGCTCGAATTGCTCGGGCTCACCCCGCAACAGGCGAAGCGCGCGCTCGCCGAG 3317 | | ||| ||||||| | || | ||| ||| | ||||| || || ||| Sbjct 4245 GTATGGAAATGCTCGGCATGACACAGCAGCAGATCGATCGCGCTCTGGCGGAG 4193 >seq1401 Length=3734 Score = 138 bits (152), Expect = 3e-28 Identities = 308/459 (67%), Gaps = 40/459 (9%) Strand=Plus/Minus Query 896 TCAAGAACGGCTCGCGCATCATGTTCGGCGCTCGCGAGAACGGCTTCGGGCTCGGCTTCG 955 ||||||||||||| || ||||||||||| || |||||| ||||||||| | |||||||| Sbjct 1051 TCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCG 992 Query 956 CGAAGGTCGGCGTCCTGGTGCTCGACGAGGCGCAGCGACTCACGTCCAAAGCAATGGACG 1015 | |||| |||| ||||| ||| ||||||||| ||| ||| || | || | Sbjct 991 CCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCCCTTGAGG 932 Query 1016 ACCTGATCCCGACGATGAACACCGTCG-AGAACCCGCTTGTGCTGCTCACGGGTACGCCA 1074 || || | || | | ||| || ||| |||||||||| | | || | ||| || || Sbjct 931 ACATGGTGCCCGCCACCAACGCC-TCGAAGAACCCGCTCATCATCCTGATGGGCACCCCG 873 Query 1075 CCGCGGCCGACGGACGCCGGCGAAGTGTTC-------------ACGATGC-TTCG---GC 1117 || || || ||| ||||||||| |||| |||| || ||| | Sbjct 872 CCCCGCCCAGTCGACCCCGGCGAAGCGTTCCGCACCCGCCGAAACGAAGCGATCGAGCTC 813 Query 1118 AAGACGCGCTC-------------GACGGCGAATCGGAAGGCACGCTGTACGTCGAGTTC 1164 |||| || | | ||| ||||||||| || ||| |||||||| || Sbjct 812 AAGAAGCTCGCCGCCGCGGGCGAGGACACCGAATCGGA---CATGCTCTACGTCGAACTC 756 Query 1165 TCCGCGGACCGCGACGCGAACCCGGACGATCGGGCGCAGCTGCGGAAGGCGAACCCGTCG 1224 ||| |||| |||||| ||| |||||| ||| ||| | ||||| ||||| || Sbjct 755 GGCGCAGACCCCGACGCCGACCTGGACGACTGGGATCAGGTCGCCAAGGCCAACCCCTCC 696 Query 1225 TATCCGCACCGGACCAGCGAGCG-CGCGATCCGGCGTATGCGGAAGAACCTCAC---CGA 1280 || |||||||| ||| | ||| ||||||| || | || ||||||||| | ||| Sbjct 695 TACCCGCACCGCACC-CCACGCGAAGCGATCCTCCGCAACCGCAAGAACCTCGCCGACGA 637 Query 1281 GGACTCGTTCCTCCGCGAGGCGTTCGGTATCTGGGACGA 1319 ||||| | || ||| || | |||| ||||||||||| Sbjct 636 CGACTCCTACCGCCGAGAAGGCCTCGGCATCTGGGACGA 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141651426384720