Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3630 403 1e-106 seq3658 264 8e-65 seq3663 178 1e-38 seq2032 125 5e-23 seq3669 123 2e-22 seq3636 122 7e-22 seq3667 100 2e-15 seq3470 95.1 9e-14 seq3545 86.0 5e-11 >seq3630 Length=571110 Score = 403 bits (446), Expect = 1e-106 Identities = 1027/1553 (66%), Gaps = 90/1553 (6%) Strand=Plus/Minus Query 281308 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 281367 |||| ||| || |||| ||| ||||| | | |||||| ||||| | | ||| || || Sbjct 458738 ATCTTCTTTCTCGAATTGTTTCGCTTCGTTTACCATTCTATCAATATCAGCTTGCGATAA 458679 Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 281427 || ||| | ||| ||| || || || | ||| ||||||||||| | || Sbjct 458678 TCGTCCTTTCTCATTTCGAATTGTGATTCGATTCGTTTTTCCAGTTGATTTATCCTCAGC 458619 Query 281428 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 281487 | |||||| | || ||||| ||||| | |||||| ||||||||||||||||| || || Sbjct 458618 CGACACATTCAATATTCCATTTGCATCGATATCAAAAGTGACTTCAATTTGAGGAACACC 458559 Query 281488 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 | ||||||| || || || | | |||||||| ||| | |||||| ||| Sbjct 458558 ACGTGGAGCAGGAGGAATTCCAGAAAGTTCGAATGTTCCGAGACGGTGATTATCACGAGT 458499 Query 281548 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 281607 | ||||| || ||| ||| |||||| | |||| | | ||||||||| | ||| || Sbjct 458498 CATGGCACGTTCTCCTTCGTAAACTTGGATTGAAACTCCTGGTTGATTATCAGCATATGT 458439 Query 281608 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 281667 ||| ||| | | || ||| |||||| ||||||| |||||| | |||||||| Sbjct 458438 TGTGAATGTTTTCGACGCTTTCGTTGGAATTCGAGTGTTTCGATCAATTAAGTTGGTCAT 458379 Query 281668 AATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT 281727 | |||||||||||| || | |||||| | |||| |||||||| || | | || Sbjct 458378 CACACCACCAGCTGTCTCAATTCCAAGACTCAATGGAGCAACATCAACCAGTAATACATC 458319 Query 281728 TTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 281787 || || | ||| ||| | ||| ||| | ||||||||||| ||||| ||| |||| Sbjct 458318 TTTAATTGTTTGATCCTTCACTCCAGAAAGTACAGCTGCTTGAACTGCAGCTCCAAATGC 458259 Query 281788 AACAGCTTCATCAGGATT-----AACAGT----TTC------------------------ 281814 ||| ||||| || ||||| |||| | ||| Sbjct 458258 AACTGCTTCGTCTGGATTGATTGAACAATTCAATTCCTGAAAAACAAAAAATTAGAATAA 458199 Query 281815 ------ATTTAGTT-------------TT---TTACCATTGAAAAAATTTGAAAGAAGTT 281852 ||| |||| || || ||||||||||| | | || | | Sbjct 458198 AATGAAATTGAGTTGAGATAATAACACTTACCTTTCCATTGAAAAAGTCTTTGAGCA-TC 458140 Query 281853 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| | | | |||| ||||| |||||| ||||| || || | ||||| | || ||| Sbjct 458139 TTCTGAATTTTCGGAACACGAGTTGATCCACCAACCAAAACGACTTCATCAATCTTCGAT 458080 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971 || || ||||| | ||| | | |||| ||||| ||||||||| | || | Sbjct 458079 TTGTCGAGTTTCGCATCTCGAAGAGCTTTCTCAACCGGTTCAAGAGTCTTACGGAATAGA 458020 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA-----GAGTGACATTATAATCAATTC 282026 || | ||| | ||| || ||| ||| | ||| | ||| ||| |||| |||| Sbjct 458019 TCAGCACACAATTCCTCAAATCGAGCACGAGTTATTTTCGAG-CACA----AATCGATTC 457965 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 282086 ||||||| | ||||||||||| || || | || | ||| || |||| | ||| | Sbjct 457964 CTTCGAAAAGTGAATCAACTTCGATTGTGGCTTCGGATGAACTCGAAAGTGTCCTTTTGG 457905 Query 282087 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT 282146 | ||||||||||| || | || | ||| | ||| || |||| | |||| | ||| Sbjct 457904 CTCGTTCACATGCAGTTCGAAGACGTCGAATGGCACGTG--GATTCGGTGAAATATCTTT 457847 Query 282147 --TATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCT 282202 | ||||||||||| || | || | |||| | | | | ||| |||||| Sbjct 457846 GCCAGTCTTTCTCTTGAATTCAT--TCATAAAGTGTTGAAGCATTCTCTGATCGAAATCT 457789 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA---GTCCATCTTCA 282259 || ||||| | | ||||| || | || | | | |||| ||| | ||| || | Sbjct 457788 TCTCCTCCAAGATGAGTATCACCAGCTGTTGATTTCACTTCGAATATTGATCCTTCAGAA 457729 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | || | || | ||||||| || || || || | ||| || || | ||||||| | Sbjct 457728 ATGGAAAGAATTGAAACATCAAAAGTACCTCCTCCAAGATCGAATATCAATACATTCTTC 457669 Query 282320 TCTTTGTCTTGGT-TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 282378 |||| | ||| | |||||| | ||||| |||| |||||| |||||||||||||| || Sbjct 457668 TCTTCG-CTTATTCCTTTATCCAATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGAT 457610 Query 282379 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 282438 |||| | |||| | ||||||||| || |||||||||| || |||||||| || Sbjct 457609 TATTCGAATTGCATTCAATCCAGCAATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACT 457550 Query 282439 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 || || ||||||||||| |||||||| || |||||| ||| | | ||||| ||| | Sbjct 457549 GTCATTGAAATATGCAGGTACAGTAATCACTGCATCTTTTATCGCATGTCCAACATATGT 457490 Query 282499 GCTTGCTGTTTGTTTCATTTTACTTAA-AATCATTGATGAAATTTGTTCTGGAGAATATT 282557 || |||| ||||| || || || | ||||| ||| |||| ||||||| ||| Sbjct 457489 TTCCGCCGTTTCCTTCATCTT-CTGAAGTACCATTGCTGAGATTTCTTCTGGATTGAATT 457431 Query 282558 GC--TTGGATTCATTTTGATATGATACTTCAAAATATGGTTT--ATTACCAACATTAATA 282613 || || || ||| || | | ||||||| |||||| || | || | Sbjct 457430 GCCGTTTCTCTC-CTTTCATTTCA-ACTTCAATCACTGGTTTCCCTTGTTTTCCTT--TT 457375 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 ||| ||||||||||| ||| ||||||||||| || |||| ||| ||| ||| Sbjct 457374 ACTCCAAATGGCCAATGTTTGCAGTCTGATTGAACTGTTGACTCATCGAAACGTCTTCCA 457315 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || |||||||||||||| || | ||| || ||||||| || ||||||| ||| ||| Sbjct 457314 ATCAATCGTTTTGCATCGAATACAGTGTTCTCTGGATTACGAGCTGCTTGATCTTTTGCT 457255 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786 |||||||||| || ||||||| || || |||| ||||||||||| ||||| Sbjct 457254 GCATCTCCAACCAATCGTTCTGTATCAGTGAATGCGACATATGATGGTGTTGT 457202 Score = 205 bits (226), Expect = 7e-47 Identities = 312/436 (72%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 ||||| |||||||||||||| || |||| | |||| ||||||||| || ||||| Sbjct 455857 GCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCCATCCAGCAATTGTTGCTGCA 455916 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCT 282475 ||||| || |||||||| || || || ||||||||||| |||||||| || |||||| Sbjct 455917 TCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACAGTAATCACTGCATCT 455976 Query 282476 GTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAA-ATCATTGA 282534 ||| | | ||||| ||| | || |||| ||||| || || || | ||||| Sbjct 455977 TTTATCGCATGTCCAACATATGTTTCCGCCGTTTCCTTCATCTT-CTGAAGTACCATTGC 456035 Query 282535 TGAAATTTGTTCTGGAGAATATTGC--TTGGATTCATTTTGATATGATACTTCAAAATAT 282592 ||| |||| ||||||| ||||| || || ||| || | | ||||||| | Sbjct 456036 TGAGATTTCTTCTGGATTGAATTGCCGTTTCTCTCCTTTC-ATTTCA-ACTTCAATCACT 456093 Query 282593 GGTTTA--TTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACAC 282650 ||||| || | || | ||| ||||||||||| ||| ||||||||||| Sbjct 456094 GGTTTCCCTTGTTTTCCTT--TTACTCCAAATGGCCAATGTTTGCAGTCTGATTGAACTG 456151 Query 282651 TTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGAT 282710 || |||| ||| ||| ||||| |||||||||||||| || | ||| || ||||| Sbjct 456152 TTGACTCATCGAAACGTCTTCCAATCAATCGTTTTGCATCGAATACAGTGTTCTCTGGAT 456211 Query 282711 TAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 282770 || || ||||||| ||| || |||||||||| || ||||||| || || |||| || Sbjct 456212 TACGAGCTGCTTGATCTTTTGCCGCATCTCCAACCAATCGTTCTGTATCAGTGAATGCAA 456271 Query 282771 CATATGATGGAGTTGT 282786 |||||||||| ||||| Sbjct 456272 CATATGATGGTGTTGT 456287 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 || || || |||||||| ||||||||||||||||| |||||| || ||| || || Sbjct 457647 AATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCAATCCA 457588 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 |||||| | || | ||| |||||||||||||| |||||| |||||||| |||||| Sbjct 457587 GCAATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACA 457528 Query 86236 GTAATAACTGC 86246 ||||| ||||| Sbjct 457527 GTAATCACTGC 457517 Score = 93.3 bits (102), Expect = 3e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 400519 CGATATGGTAGTATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGA 400578 || |||||| || || ||||||| ||||||||||||| || || |||||| |||||| Sbjct 91181 CGTTATGGTCGTCTTCTGATTCTAGCTGATCAAGATGAAGACGGTAGCCATATTAAAGGA 91122 Query 400579 TTAATCATGAATTTTATCCATTGTTTTTGGCCATCTCTTGTTAAATACGA-AGGGTTTAT 400637 | |||| |||||||| || |||||||| |||| || | | | || || || Sbjct 91121 CTCGTCATCAATTTTATTCACAAGTTTTGGCCGAGTCTT-ATACGTTCTAGAGATTTCAT 91063 Query 400638 TCAATCATTTGCAACTCCACTATTAAAAGCCACCAAAGGA 400677 |||||||||| |||||||| ||||||| | |||||| Sbjct 91062 TCAATCATTTCGTACTCCACTTCTAAAAGCAAAGAAAGGA 91023 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 86131 GCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAA 86190 || ||||||||||||||||| |||||| || ||| | || |||||| | || | | Sbjct 455857 GCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCCATCCAGCAATTGTTGCTGCA 455916 Query 86191 TCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGC 86246 || |||||||||||||| |||||| |||||||| ||||||||||| ||||| Sbjct 455917 TCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACAGTAATCACTGC 455972 >seq3658 Length=1447888 Score = 264 bits (292), Expect = 8e-65 Identities = 537/782 (69%), Gaps = 23/782 (3%) Strand=Plus/Plus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 ||||||||| |||||| | ||||||||||| || || | || | ||| || |||| Sbjct 1288801 AATCAATTCTTTCGAAAAGTGAATCAACTTCGATTGTGGCTTCGGATGAACTCGAAAGTG 1288860 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 282137 | ||| || |||||| |||| || | || | ||| | ||| || |||| | | Sbjct 1288861 TCCTTTTGGCTCGTTCAAATGCAGTTCGAAGACGTCGAATGGCACGTG--GATTCGGTGA 1288918 Query 282138 AATCTGTTTTATATT--TTCTCTTGAAATCTTCAACACACCATGTTACAAGA--CGATTA 282193 ||| | ||| | | |||||||||| || | | | | |||| | | | | | Sbjct 1288919 AATATCTTTGCCAGTCTTTCTCTTGAATTCATTCATAAAG--TGTTGAAGCATTCTCTGA 1288976 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 || |||||||| ||||| | | ||||| || | || | | | |||| ||| | | Sbjct 1288977 TCGAAATCTTCTCCTCCGAGATGAGTATCACCAGCTGTTGATTTCACTTCGAATATTGAT 1289036 Query 282254 TCTTCAAGAGACAAAAGAGT---AACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||||| | ||||| | ||||||| || || || || | ||| || || | | Sbjct 1289037 CCTTCAGAAATGGAAAGAATTGAAACATCAAAAGTACCTCCTCCAAGATCGAATATCAAT 1289096 Query 282311 ACATTCATTTCTTTGTCTTGGTT-TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 |||||| | |||| | ||| | |||||| | ||||| |||| |||||| |||||||| Sbjct 1289097 ACATTCTTCTCTTCG-CTTATTCCTTTATCCAATCCATAAGCAAGAGCAGCTGCAGTTGG 1289155 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 |||||| || |||| | |||| | ||||||||| || |||||||||| || ||||| Sbjct 1289156 TTCATTGATTATTCGAATTGCATTCAATCCAGCAATTGTTGCTGCATCTTTTGTTGCTTG 1289215 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCC 282489 ||| || || || ||||||||||| |||||||| || |||||| ||| | | ||| Sbjct 1289216 TCTCTGACTGTCATTGAAATATGCAGGTACAGTAATCACTGCATCTTTTATCGCATGTCC 1289275 Query 282490 AATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAA-AATCATTGATGAAATTTGTTCTG 282548 || ||| | || |||| ||||| || || || | ||||| ||| |||| ||||| Sbjct 1289276 AACATATGTTTCCGCCGTTTCCTTCATCTT-CTGAAGTACCATTGCTGAGATTTCTTCTG 1289334 Query 282549 GAGAATATTGC--TTGGATTCATTTTGATATGATACTTCAAAATATGGTTT--ATTACCA 282604 || ||||| || || ||| || | | ||||||| |||||| || Sbjct 1289335 GATTGAATTGCCGTTTCTCTC-CTTTCATTTCA-ACTTCAATCACTGGTTTCCCTTGTTT 1289392 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664 | || | ||| ||||||||||| ||| |||||||| || || |||| |||| Sbjct 1289393 TCCTT--TTACTCCAAATGGCCAATGTTTGCAGTCTGATTGGACTGTTGACTCATCAAAA 1289450 Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724 ||| ||||| |||||||||||||| || | ||| || ||||||| || |||||| Sbjct 1289451 CGTCTTCCAATCAATCGTTTTGCATCGAATACAGTGTTCTCTGGATTACGAGCTGCTTGA 1289510 Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 282784 | ||| ||||||||||||| || ||||||| || || |||| ||||||||||| ||| Sbjct 1289511 TCTTTTGCTGCATCTCCAACCAATCGTTCTGTATCAGTGAATGCGACATATGATGGTGTT 1289570 Query 282785 GT 282786 || Sbjct 1289571 GT 1289572 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 || || || |||||||| ||||||||||||||||| |||||| || ||| || || Sbjct 1289127 AATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCAATCCA 1289186 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 |||||| | || | ||| |||||||||||||| |||||| |||||||| |||||| Sbjct 1289187 GCAATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACA 1289246 Query 86236 GTAATAACTGC 86246 ||||| ||||| Sbjct 1289247 GTAATCACTGC 1289257 >seq3663 Length=2118579 Score = 178 bits (196), Expect = 1e-38 Identities = 561/871 (64%), Gaps = 65/871 (7%) Strand=Plus/Plus Query 281308 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 281367 |||| ||| ||||||| || ||||| | | ||| | ||||| | | ||| || || Sbjct 362088 ATCTTCTTTCTCAAATTGCTTCGCTTCGTTCACCATACGATCAATATCACCTTGCGACAA 362147 Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 281427 |||||| | ||| |||||| || || ||||| |||||||| || | || Sbjct 362148 TCTTCCCTTTTCATTTCGAATAGTGATTCGATTCGATTTTCCGGTTGATTTGTCTTCAGC 362207 Query 281428 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 281487 | || || ||||| ||||| ||||| | ||| || |||||||||||||| || || || Sbjct 362208 GGATACGTTCAGAATTCCATTCGCATCGATATCGAAAGTGACTTCAATTTGTGGAACTCC 362267 Query 281488 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 | ||||||| || || || | | ||||| || ||| | |||||| ||| Sbjct 362268 ACGTGGAGCAGGAGGAATTCCAGAGAGTTCGAATGTACCAAGACGGTGATTATCACGAGT 362327 Query 281548 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 281607 | | ||||| || || | | ||| || |||| | |||||| || ||||| || Sbjct 362328 CATTGCACGTTCTCCTTCATAGACTTGAATGAAAACTGATGCTTGATTGTCAGAATATGT 362387 Query 281608 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 281667 || || | | || ||| |||||||| || ||||||||||||||| | ||||| Sbjct 362388 GGTGAAAGTTTTCGAAGCTTTTGTTGGAATTGTGGTATTTCTATCAATAATACTAGTCAT 362447 Query 281668 AATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT 281727 || || ||||| ||||| | |||||| | || | ||||| || || | | || Sbjct 362448 AACTCCTCCAGCAGTTTCAATTCCAAGACTCAATGGTGCAACATCGACAAGCAATACATC 362507 Query 281728 TTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | | | | || || ||||| ||| ||| | ||||||||| | |||||| ||| || Sbjct 362508 CTTGATTGTGTCGTC--TTTGACTCCAGAAAGTACAGCTGCTTGGACAGCAGCTCCAAAT 362565 Query 281786 GCAACAGCTTCATCAGGATT-----AACAGTTTCATT----TAGTTTTTTACCATTGAAA 281836 || ||||||||||| ||||| |||| ||| ||| || || ||| || || Sbjct 362566 GCGACAGCTTCATCCGGATTTATTGAACAATTTAATTCCTGTAAGTTATTA-AATAGATT 362624 Query 281837 AAATT---------TGAA---AGAAGTT-----------------GTCTT---------- 281857 ||||| ||| |||| || ||||| Sbjct 362625 AAATTCATCAGTCGAGAATTCAGAACTTACCTTTCCATTGAAAAAGTCTTTGAGCATCTT 362684 Query 281858 ----ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 281913 | ||| |||| ||||| |||||||||||| || || | ||||| | || |||||| Sbjct 362685 TTGAATCTTTGGAACACGAGTTGATCCTCCAACCAAAACGACTTCATCAATCTTTGATTT 362744 Query 281914 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC 281973 || ||||| |||||| | | | || ||||| ||||||||| | |||| || Sbjct 362745 GTCAAGTTTCGAATCCCGGAGAGCCTTCTCAACTGGTTCAAGAGTCTTACGGAACAGATC 362804 Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAA---GAGTG-ACATTATAATCAATTCCTT 282029 | ||| | |||||| || ||| | |||| ||| | ||| |||||||||||| Sbjct 362805 AGCACATAATTCTTCAAAACGAGCACGTGTAATTCGAGAGCACA----AATCAATTCCTT 362860 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 |||| | ||||| ||||| | || | || | ||| ||| |||| | || || | Sbjct 362861 CGAAAAGCGAATCGACTTCGACAGTTGCTTCCGATGAACTAGAGAGTGTCCTCTTGGCTC 362920 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTAAGGC 282120 ||||||| || || | || | ||| | ||| Sbjct 362921 GTTCACAAGCAGTTCGAAGGCGTCGAATGGC 362951 Score = 98.7 bits (108), Expect = 7e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 |||| ||||||| ||| |||| ||||||| | |||| ||| ||| ||||| | Sbjct 363233 TAAACGGCCAATGTTTACAATCTTCTTGAACAACTGACTCATCGAAACGTCTTCCAATCA 363292 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 |||||||||||| |||| ||||| ||||| ||||||||||| ||| || | || Sbjct 363293 GTCGTTTTGCATCGAAAACCGTATTCTCAGGATTCCGTGCAGCTTGATCTTTTGCAGAAT 363352 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 |||||| || |||| || || || |||| ||||| ||||| || || || |||| Sbjct 363353 CTCCAACGAGTCGTTCAGTGTCAGTGAATGCCACATAAGATGGTGTCGTCTTGTTTCCTT 363412 Query 282798 GATCATTCGCAATAATTTCAAC 282819 || |||| |||||||| Sbjct 363413 CGGAGTTGGCAAGGATTTCAAC 363434 >seq2032 Length=7970 Score = 125 bits (138), Expect = 5e-23 Identities = 158/213 (74%), Gaps = 7/213 (3%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||| |||||| ||||||||||||||||| ||||| || | ||| Sbjct 2471 TTTTTGTCCATACCGAACGCAAGTGCAGCAGCAGTTGGTTCGTTAATGATACGTTTAACT 2412 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | ||||||||||| | || |||||||| || ||||| | ||||| ||| || || || Sbjct 2411 TCTAGACCAGCAATACGACCAGCATCTTTTGTTGCTTGACGTTGTGCATCATTGAAGTAA 2352 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 |||||||| |||||||| || |||||||| | ||| | ||||| | | | |||| | Sbjct 2351 GCAGGAACTGTAATAACAGCTTCTGTTAC-TGTTTCCTAATAT---CTC-CCCAGTTTTT 2297 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 |||||||| || |||| || ||||| ||| Sbjct 2296 TTCATTTT--TTCAAATTTCTGCAGAAATCTGT 2266 >seq3669 Length=3217881 Score = 123 bits (136), Expect = 2e-22 Identities = 250/365 (68%), Gaps = 11/365 (3%) Strand=Plus/Plus Query 400262 ATGCTCACAAAGCAGGAACCAAAGAAGGATATA-AATGTACCCTAATTTTGACAGAGGGA 400320 ||||| || | ||||| || |||||| | | ||||||| | || | || |||||| Sbjct 1315057 ATGCTAACGACGCAGGTAC-AAAGAACTCTCAACAATGTACTTTGATCCTTACTGAGGGA 1315115 Query 400321 GATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGATTATTATGGA 400380 ||||| |||||||| || || | ||||| || |||| | || | || | | |||| Sbjct 1315116 GATTCTGCTAAAACTTTGGCAGTTTCTGGACTGGCTGTTGTCGGTCGTGACAAGTTTGGA 1315175 Query 400381 GTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGCC 400440 || ||||||||| ||||||| ||| | |||||| | || | | | || |||||||| Sbjct 1315176 GTGTTCCCACTTCGAGGAAAGCTTCTCAATGTTCGTGACGGAAATATGAAGCAAATTGCC 1315235 Query 400441 GATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTT--GAACAAG--GAAA--- 400493 || |||| ||||| | ||||| | ||||| | || ||| | ||||| |||| Sbjct 1315236 GACAATGCTGAAATCAATGCAATGATCAAAATCCTCGGTCTTCAGTACAAGAAGAAATAC 1315295 Query 400494 -AG-TTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAA 400551 || | |||||| ||||| | | || || || | || ||| || | |||||||| Sbjct 1315296 GAGACGGAAGATGATTTCAAAACTCTTCGTTACGGAAAAATGATGGTTATGGCTGATCAG 1315355 Query 400552 GATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGTTTTTGGCCA 400611 ||| || || | || |||||||| | | || || ||| | ||| ||| |||||| Sbjct 1315356 GATCAGGACGGCTCTCACATCAAAGGTCTCGTTATCAACTTTGTTCATCATTTCTGGCCA 1315415 Query 400612 TCTCT 400616 ||||| Sbjct 1315416 TCTCT 1315420 >seq3636 Length=634842 Score = 122 bits (134), Expect = 7e-22 Identities = 430/663 (65%), Gaps = 23/663 (3%) Strand=Plus/Plus Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCC 281883 || ||||||||||||| ||| | || ||| | ||| |||| | | || ||||| Sbjct 358339 TTTCCATTGAAAAAATCCTTAAGCAATT-TCTGAATCTTCGGAACTCTCGTGGAACCTCC 358397 Query 281884 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTC 281943 || || |||| ||||| | ||| ||||| | |||| ||| || | ||||| Sbjct 358398 GACCAACACAACTTCATCAATGTGTCCCTTATCTATCTTTGCATCTCTCAATGCCTTTTC 358457 Query 281944 AACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 282003 |||||| || | || ||||| || | |||||||||||||||| ||| | || Sbjct 358458 AACGGGCTCCAATGTCTTTCGGAACAAATCAGCACAAAGTTCTTCGAATCGAGCACGTGT 358517 Query 282004 AAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT 282063 | || || | ||| |||| || ||||| ||||| ||||| | |||| | || Sbjct 358518 GATTTTGGAATAGAAGTCAGTTCCATCAAACAAGGAATCCACTTCTACAGTAGCCTCGGT 358577 Query 282064 CGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT 282123 || || | || | || ||||||||||| ||||| | || | || | || Sbjct 358578 AGAGCTGGACAATGTTCTCTTGGCACGTTCACAAGCTGTTCGAAGGCGGCGAATAGCACG 358637 Query 282124 TGCTGATTGATTCAAATCTGTTTTATATTTTCTC--TTGAAATCTTCAACACACCATGTT 282181 || |||| |||| | |||| ||| | ||||| || | | | | ||||| Sbjct 358638 TG--GATTCGGAGAAATGTCTTTTCCGGTTTTCCGTTTGAACTCATTCATAAA--ATGTT 358693 Query 282182 ACAAGACGATTAT-----CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 282236 || ||| | | |||||||||||||| | | ||||| ||| | |||| || Sbjct 358694 G---GAGCATTCTGGAGTCGAAATCTTCACCTCCGAGATGAGTATCTCCGGCGGTAGATC 358750 Query 282237 TTACTTGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCAC 282293 | |||| ||||| ||| || | | || | || | ||||| || ||||| | Sbjct 358751 TCACTTCGAAAATGGATCCTTCAGCGATCGATAGAATTGATACATCGAATGTACCACCTC 358810 Query 282294 CCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT--TTATCAAGACCATACGC 282351 ||| ||| || || | || || ||||| ||| || || || | || || || Sbjct 358811 CCAAATCGAAGATCAAAACGTT--TTTCTCCTCATTGATTCCCTTGTCCAATCCGTAAGC 358868 Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411 | |||||| |||||||||||||| || || | | | |||| ||||||||||| || | Sbjct 358869 GAGAGCAGCTGCAGTTGGTTCATTGATGATACGAATAGCATTGAGACCAGCAATGGTTGC 358928 Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| || ||||| | || || || || || ||||| |||||||| || || Sbjct 358929 AGCATCTTTGGTAGCTTGACGCTGACTGTCATTGAAGTAGGCAGGTACAGTAATCACAGC 358988 Query 282472 ATC 282474 ||| Sbjct 358989 ATC 358991 Score = 118 bits (130), Expect = 8e-21 Identities = 319/488 (65%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 281318 TCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 281377 || |||| ||| ||||| | | |||||| || |||| | || ||| |||||||| Sbjct 357747 TCGAATTGTTTCGCTTCATTGACCATTCTATCGATTTCAATTTGAGACAATCTTCCCTTC 357806 Query 281378 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 281437 | ||| || || ||| || || || || |||||||| | || | |||||| Sbjct 357807 TCATTGCGGATTGTGATACGGTTAGACTTTCCAGTGGATTTATCCTCAGCCGACACATTC 357866 Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497 | || || || || || | |||||||||||| || ||||| ||||| || | | || Sbjct 357867 AAGATTCCGTTTGCGTCAATATCAAATGTGACATCGATTTGTGGGACTCCACGTGGTGCT 357926 Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557 ||||| || || ||| | ||| |||||||| | ||||||| ||| | || Sbjct 357927 GGTGGTATTCCAGTCAATTCAAACGTTCCCAGTCGGTGATTATCTCGAGTCATGGCACGC 357986 Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 || || ||| | | ||| |||| ||| | | ||||||||| | ||| || || || Sbjct 357987 TCTCCTTCGTAGACTTGAATAGAAACACCCGGTTGATTATCAGCATAGGTAGTGAAGGTC 358046 Query 281618 CTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCA 281677 | ||| |||| ||||| ||||| | || || | ||| ||||| | || || Sbjct 358047 TTCGATGCTTTAGCTGGAATGCGAGTGTTACGGTCGATGAGATTTGTCATCACTCCTCCG 358106 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 || || || | |||||| | || | |||||||| || | || | || | | || Sbjct 358107 GCAGTCTCAATTCCAAGACTCAATGGGGCTACATCAACAAGTAAAACGTCTTTGATTGTT 358166 Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 ||||| | || ||||| || ||||||| ||| || || | || || ||||| Sbjct 358167 TCATCCTTCACTCCGGAGAGAATTGCAGCTTGAACAGCTGCGCCGAAAGCGACGGCTTCG 358226 Query 281798 TCAGGATT 281805 || ||||| Sbjct 358227 TCTGGATT 358234 Score = 93.3 bits (102), Expect = 3e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 282678 ||||||||||| || ||||| ||||||||| ||| || | ||| ||| ||||| | Sbjct 359211 AAATGGCCAATGCTTGATATCCGATTGAACAGTTTCCTCGTCAAAGCGTCTTCCAATAAG 359270 Query 282679 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATC 282738 || |||||||| || | || || ||||||| || ||||||| |||||| ||||| Sbjct 359271 ACGCTTTGCATCGAAGACTGTGTTTTCTGGATTACGAGCGGCTTGATCTTTGGCGGCATC 359330 Query 282739 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 282798 |||| || || || ||||| |||| || || || || || || ||||||| Sbjct 359331 ACCAACAAGTCTCTCGGTATCTGTGAATGCCACGTAGGAAGGTGTGGTCTTGTTACCTTC 359390 Query 282799 ATCATTCGCAATAATTTCAAC 282819 || |||| |||||| || Sbjct 359391 TGAGTTGGCAAGAATTTCGAC 359411 >seq3667 Length=2326506 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | ||||| |||| |||||||||||||| || ||||| | | | || || Sbjct 1302839 TTTATCCAATCCATAGGCAAGTGCAGCAGCAGTTGGCTCGTTAATGACACGAAGGACGTT 1302898 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||| | |||| ||| ||||| ||||||||||||| || ||||| || ||||| || Sbjct 1302899 GAGACCGGAAATTTGTCCAGCATCCTTAGTGGCTTGTCGCTGAGAATCATTGAAATAAGC 1302958 Query 282454 AGGAACAGTAATAACGGC 282471 |||||||| | ||| || Sbjct 1302959 TGGAACAGTGACAACAGC 1302976 >seq3470 Length=172114 Score = 95.1 bits (104), Expect = 9e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 131183 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAC 131242 || ||||| |||||||| ||||| || ||||||| |||||| || |||| || |||||| Sbjct 54971 GCTACAATTGCATTTGGGATGGGAATCGATAAACCAGATGTTCGATTTGTCATCCATTAC 54912 Query 131243 GGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGGA 131302 | ||| || || ||||| || |||||||| | ||||||||||||| | |||||| Sbjct 54911 AGTCTTCCGAAATCAATCGAAGGATACTATCAAGAGACTGGTAGAGCAGGTAGAGATGGA 54852 >seq3545 Length=268503 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| ||| ||||| ||||| ||| | ||||||||||||||||| ||||| ||| | || | Sbjct 8228 TGAAAGGAAAAGAGGGTCGAATTCGTGGAAATTTGATGGGAAAACGTGTGGATTTCTCGG 8287 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCA 432402 | ||||| || ||||| | ||||| ||| | | || || ||| ||||| || | | Sbjct 8288 CGCGTACTGTAATTACAGCCGATCCGAATCTCCCAATCGATACAGTCGGTGTGCCGCGAA 8347 Query 432403 TTATTGCGAAAAATCTTACTTT 432424 || || ||||||| || || Sbjct 8348 CAATCGCTCAAAATCTGACATT 8369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740450218509420