Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023698.1 Length=54470 Score E Sequences producing significant alignments: (Bits) Value seq2028 86.0 2e-12 >seq2028 Length=10780 Score = 86.0 bits (94), Expect = 2e-12 Identities = 482/759 (64%), Gaps = 21/759 (3%) Strand=Plus/Minus Query 2759 AAGTGGCAGGTCGACCGTGATGATCATGTTTACGGTGTGCCGGCGCAGGTGTTGCCGTAC 2818 ||||||||||| |||||| || |||| | ||| ||||| | | || |||| Sbjct 4960 AAGTGGCAGGTGGACCGTTCGGAGCATGGGTGGCATGTCCCGGCTGACCCGCTGGTGTAC 4901 Query 2819 AAGCCT-GCAC--CGAAGCGTCCGTTTGGGCAGTCGCGGATCACTAAACCCATGATGGGG 2875 ||||| | || |||||||| | |||| |||||| ||||| | ||| Sbjct 4900 AAGCCGCGTACGTCGAAGCGTATG---GGGCGGTCGCGCATCACGCGCGCGGCGATCTCA 4844 Query 2876 TTGCAGGACGCGGGGGTGCGTGAACTGGCCCGCCGCGAAGGCCACATGGATGTGTTCTCT 2935 ||| |||| | | | || ||||| | |||| ||||| |||||||| |||||| | Sbjct 4843 CACCAGTACGCCGCGCTTCGAGAACTTGTGCGCCTCGAAGCACACATGGACGTGTTCACG 4784 Query 2936 TATCCAG-AGTTTTGGCTGCTTGGCGCTGATGAGTCGGCGCTGAAAAACGCTGACGGAAC 2994 |||| | || | ||||| |||||| | || | | | || ||||| ||||| | Sbjct 4783 -ATCCCGCAGCTCATCCTGCTGGGCGCTAACGAAGCAATGTTCAAGAACGCAGACGGGTC 4725 Query 2995 GATAAAGTCGGTGTGGGAAGCTCGC-CTGGGCCGGATCAAGGGTCTTCCTGATGATGCTG 3053 | ||| || | | || || |||| || || || || | | || || || | | Sbjct 4724 GTACAAGGCG-TCTTGGCAGATCGCTCTCGGGCGTGCGCTGGCTATCCCCGACGACGACG 4666 Query 3054 ATGCGGATATTCCGCAGCTTGCACGTGCGGATGTGAAGCAGTTCCCCGCCGCGTCACCGG 3113 |||| | | | || || ||||| |||||||| || | || ||| |||| Sbjct 4665 ATGCTCCTGCTGGCTCGGATGGGCGCGCGGACGTGAAGCACATCGCTGCGCAGTCGCCGG 4606 Query 3114 ATGCGCATTGGTCTGACATCAATGGGTTGGCGAAACTGTTCGCCCGTGAGG-CGTCGCTT 3172 |||| | | |||| | ||||||||| || || || ||| || | || Sbjct 4605 CACCGCACCTCGCGGCGCTCAACGCGTTGGCGAAGCTCGAGGCGCGCGAGTACGAC-CTG 4547 Query 3173 CCGGATACGGCGGTGGCGATTTCTGGGTTGTCGAATCCGACGTCGGCTGAGTCGTATGAC 3232 || ||| ||| | ||||| | | || |||| ||||| ||| || ||||| Sbjct 4546 CCCGATTCGGATTTCGCGATGACGGACTTCGCGAACCCGACTGGGGCGGATTCGTACACG 4487 Query 3233 GCTTCGCAGTACGAGCTGATCGCTGAGGCTGAAGGCGCGGTGGATGATTTCACGCCGGCG 3292 || || | | | | ||||||| ||||| || |||||| ||||| | | | || Sbjct 4486 GCGTCTCGGGAGAACTTGATCGCCGAGGCGGAGGGCGCGACCGATGACTGGTCTGTGCCG 4427 Query 3293 CTGCGGAAGGCGTTCATTCGTGCTTTGGCGATGAAAAACAAGGTTGCGATCGACGAGATC 3352 | || || ||| | | |||||| |||| || | ||| || || || || Sbjct 4426 ATCCGCAACGCGGTGGTGCGTGCTCTGGCAATCCAGAACGGCGTGACG------GAAGTC 4373 Query 3353 CCCGATGAGTGGAAGTCGATCGATGCGAAGTGGCGGGATCCGCGGTATCTGTCGAAGTCG 3412 |||| ||| ||| ||||||||| |||||||||| |||| ||||||||||||| | Sbjct 4372 CCCGCTGATTGGGCGTCGATCGACACGAAGTGGCGTTCTCCGATGTATCTGTCGAAGGCC 4313 Query 3413 GCGCAGGCTGATGCGGGGATGAAGCAGTTGGCGGC-GGTGCCG--TGGCTTGCGGAGACC 3469 || || |||||||| ||||||| | || | ||| | | ||| | ||| || Sbjct 4312 GCCGTCGCAGATGCGGGCGCGAAGCAGGTCTCGTCTGGTCCTGACTGGTTGAAGGACACT 4253 Query 3470 GAGGTCGGTTTGGAACTGATCGGTTTGACACCCCAGCAG 3508 |||||| ||||| || |||| |||||| |||||| Sbjct 4252 CGCGTCGGTATGGAAATGCTCGGCATGACACAGCAGCAG 4214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174174808913280