Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023705.1 Length=41650 Score E Sequences producing significant alignments: (Bits) Value seq2028 147 6e-31 seq1401 136 1e-27 >seq2028 Length=10780 Score = 147 bits (162), Expect = 6e-31 Identities = 234/333 (70%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 2924 CGCGAACCCGACGTCGGCCGACGCGTATATCGCGTCGCGCGAAGACCTGATCGCCGAAGC 2983 |||||||||||| ||| || |||| | ||||| || || || |||||||||| || Sbjct 4517 CGCGAACCCGACTGGGGCGGATTCGTACACGGCGTCTCGGGAGAACTTGATCGCCGAGGC 4458 Query 2984 CGAAGGCGCGACGGACGACTGGTCGCCGGCGTTCCGCCGATCCATGATCCGCGCGCTGGC 3043 || |||||||| || |||||||| | || ||||| | || | || || ||||| Sbjct 4457 GGAGGGCGCGACCGATGACTGGTCTGTGCCGATCCGCAACGCGGTGGTGCGTGCTCTGGC 4398 Query 3044 GATCAAGAACGGGCTCGACCGGA-TCCCGGACGAGTGGAAGACGATCGACGCGAAGTTCC 3102 ||| ||||||| | ||| | | |||| | || ||| | |||||||| |||||| | Sbjct 4397 AATCCAGAACGGCGT-GACGGAAGTCCCCGCTGATTGGGCGTCGATCGACACGAAGTGGC 4339 Query 3103 GGTCGCCGCTGTACCTGTCGAAGGCGGCGCAGGCCGACGCCGGCGCGAAGATGCTCGGCG 3162 | || ||| |||| ||||||||||| || || || || ||||||||| | || Sbjct 4338 GTTCTCCGATGTATCTGTCGAAGGCCGCCGTCGCAGATGCGGGCGCGAAGCAGGTCTCGT 4279 Query 3163 CTGGCCCGGAATGGCTCAAGGAAACCGAAGTCGGGCTCGAATTGCTCGGTCTCACTCCGC 3222 |||| || || ||| | ||||| || ||||| | ||| ||||||| | || | || Sbjct 4278 CTGGTCCTGACTGGTTGAAGGACACTCGCGTCGGTATGGAAATGCTCGGCATGACACAGC 4219 Query 3223 AGCAGGCGAAACGCGCGCTGGCCGAACGCCGGC 3255 ||||| | ||||| ||||| || ||| ||| Sbjct 4218 AGCAGATCGATCGCGCTCTGGCGGAGCGCAGGC 4186 Score = 98.7 bits (108), Expect = 3e-16 Identities = 293/455 (64%), Gaps = 48/455 (11%) Strand=Plus/Minus Query 867 CAACGGGAGCCGGATCCTGTTCGGCGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGG 926 |||||| ||| |||| |||||||||| |||||| ||| ||||| | ||||||| || Sbjct 6611 CAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGA 6552 Query 927 CGTCGGAATCCTCGTGCTCGACGAGGCGCAGCGGCTCACCGACAAGGCCATGGACGACCT 986 |||| ||| || |||| ||||||||| || ||||| ||||| |||| ||| | Sbjct 6551 GGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACAT 6492 Query 987 GATTCCGACGATGAACAC----CGTCGAGAATC-----CGTTGATCCTGCTCACTGGCAC 1037 | | | ||| |||| || | | | || || || | | ||| ||||| Sbjct 6491 GGTCGCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCAC 6432 Query 1038 CCCGCCGCGGCCGACGGACTCGGGCGAAGTGTTCACGATGCTCCGGCAAGACGCTCTCGA 1097 || |||||| |||| || | ||||| | || | || ||| | || || || || Sbjct 6431 GCCCCCGCGGGCGACTGATCCTGGCGAGGAGTGGCTGGAGCGCCGCAATGATGCGCTTGA 6372 Query 1098 C------------------------GGCGAGTCCGAAGGCACGCTATACGTCGAGTTCTC 1133 ||| ||| || | ||| | |||||||||||||| Sbjct 6371 GATCAAGCCGATGGATCAGGTTGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTCTC 6312 Query 1134 CGCGGACGAGGGCGCGCACCCGGACGACCGGGCGCAGC-TGCGCAAGGCGAACCCGAGCT 1192 |||||| ||| |||| ||||||||||| || || | |||| ||||| || || | Sbjct 6311 GGCGGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCG-AAGGCCAATCCTTCGT 6253 Query 1193 ATCCGCACCGCACCAGCGAGCGCGCGATTCG-----GCGTATGCGAAAGAACCTC---AC 1244 ||| ||||||||| ||| ||| ||| ||| ||||| ||||||||| | Sbjct 6252 TTCCACACCGCACC-----CCGCTCGAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAA 6198 Query 1245 CGAAGAGTCATTTCTGCGCGAGGCGTTCGGCATCT 1279 ||| || || || ||| |||||| | ||||||| Sbjct 6197 CGAGGACTCGTTCAAGCGTGAGGCGATGGGCATCT 6163 >seq1401 Length=3734 Score = 136 bits (150), Expect = 1e-27 Identities = 563/869 (65%), Gaps = 62/869 (7%) Strand=Plus/Minus Query 465 GAAGCTGTCTGAGGTTGCGCGGCACATCGTGCGGCCGGACGGCATTGTCGGGACCGCGTG 524 |||||| |||||||| || ||| | || | |||| || || || ||||| || Sbjct 1455 GAAGCTATCTGAGGTCGCCAAGCATCTGGTCCTGCCGAGTGGGATCGTGTCGACCGGCTG 1396 Query 525 GCCGCGCG-TGCGGGACACGTGCAAGAACATCGGTTGGACGTT-CGATCGCTGGCAGGAC 582 ||| |||| |||||||| |||| || || || | ||| ||| ||||||| Sbjct 1395 GCC-CGCGGTGCGGGACCAGTGCCGCAAGATGGGC-GTCCGTCACGACGAATGGCAGGCA 1338 Query 583 GGTCTAGGCCGGCTGATTCTGGC---GCTCGACGGCACAGGGCTCTATGCCGCGGACACG 639 || || || || ||| || || || || | || || || || ||||| | || Sbjct 1337 GGCCTCGGGCGCGCGATGCTCGCCAAGCGCGCCAGC---GGACTGTACGCCGCCGGCATC 1281 Query 640 TCCGTTATCAGCATCCC------CCGACAGGTCGGCAAGACGTACCTGATCGGCTGCATC 693 || |||| |||| | ||| |||||||||||||||| | ||||| | ||| Sbjct 1280 GGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATC 1221 Query 694 GTGTTCGCCCTGGCGCTGC----TCACGCCTGGGCTGACTGTCATCTGGACCGCGCACCG 749 | |||||||| |||| || || ||| || ||||||||||||||||||| Sbjct 1220 ATCTTCGCCCT----CTGCATCATCTTCCCGAAGCTCACGGTCATCTGGACCGCGCACCA 1165 Query 750 GACGAAGACCGCGAAGGAAACGTTCGGCTCGATGAAGGCCATGTGCGCA-ACGCCGCTGG 808 | ||| | || || ||||||| ||| || ||| | | || || | || | || Sbjct 1164 CTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCAGGGCTTC-GCCCAGAAGCGGAAGG 1106 Query 809 TGAACGCGCACGTGCGGAACGTCAGCGACGCGCGCGGCGACGAGGGAATCTATCTGCAC- 867 || | |||| | ||| | || || | | ||| | || ||| | || || Sbjct 1105 TGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAGCAGATC-ACCTTCAAG 1047 Query 868 AACGGGAGCCGGATCCTGTTCGGCGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGGC 927 ||||| ||||||| ||||||| || || ||| ||| ||||| | ||||||||||| Sbjct 1046 AACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGT 987 Query 928 GTCGGAATCCTCGTGCTCGACGAGGCGCAGCGGCTCACCGACAAGGCCATGGACGACCTG 987 |||| || | ||| ||| ||||||||| ||| | |||||||| | || ||| || Sbjct 986 GTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATG 927 Query 988 ATTCCGACGATGAACACCGTCGA-GAATCCGTTGATCCTGCTCACTGGCACCCCGCCGCG 1046 | || | | ||| || |||| ||| ||| | ||| | || | ||||||||||| || Sbjct 926 GTGCCCGCCACCAACGCC-TCGAAGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCG 868 Query 1047 GCCGACGGACTCGGGCGAAGTGTTC-------------ACGATGC--TCCGG--CAAGAC 1089 || ||| | ||||||| |||| |||| || || | ||||| Sbjct 867 CCCAGTCGACCCCGGCGAAGCGTTCCGCACCCGCCGAAACGAAGCGATCGAGCTCAAGAA 808 Query 1090 GCTC----TCGACGGCGAG---TCCGAA---GGCACGCTATACGTCGAGTTCTCCGCGGA 1139 |||| || |||||| ||||| | || ||| |||||||| || ||| || Sbjct 807 GCTCGCCGCCGCGGGCGAGGACACCGAATCGGACATGCTCTACGTCGAACTCGGCGCAGA 748 Query 1140 CGAGGGCGCGCACCCGGACGACCGGGCGCAGCTGCGCAAGGCGAACCCGAGCTATCCGCA 1199 | | ||| ||| ||||||| ||| ||| | |||||| ||||| ||| ||||| Sbjct 747 CCCCGACGCCGACCTGGACGACTGGGATCAGGTCGCCAAGGCCAACCCCTCCTACCCGCA 688 Query 1200 CCGCACCAGCGAGCG-CGCGATTCGGCGTATGCGAAAGAACCTCAC---CGAAGAGTCAT 1255 ||||||| | ||| ||||| | || | || ||||||||| | ||| || || | Sbjct 687 CCGCACC-CCACGCGAAGCGATCCTCCGCAACCGCAAGAACCTCGCCGACGACGACTCCT 629 Query 1256 TTCTGCGCGAGGCGTTCGGCATCTGGGAC 1284 | || || | |||||||||||||| Sbjct 628 ACCGCCGAGAAGGCCTCGGCATCTGGGAC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133152596790480