Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq363 293 7e-74 seq1057 100 9e-16 >seq363 Length=3786 Score = 293 bits (324), Expect = 7e-74 Identities = 460/648 (71%), Gaps = 13/648 (2%) Strand=Plus/Plus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||| || || ||||||||||||||||| | || |||||| | || | || | ||| Sbjct 2514 TTGGACCGACAGGTTCAGGTAAAACATTGCTGGCACAAACACTTGCACGTTTGCTTGATG 2573 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 ||||| | || || |||||||||| |||| || |||||||||||||| |||||||||| Sbjct 2574 TACCTTTTGCAATGGCTGATGCAACAACTTTGACCGAAGCTGGTTATGTTGGTGAAGATG 2633 Query 188897 TGGAAAACGT-ATT--GCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGG 188953 | |||||| | ||| | | ||| ||| ||| ||||||||| | ||| ||| Sbjct 2634 TTGAAAACATTATTCAGAAACTTTTG---CAAAAAGCGGATTACGATGTAGAAAAAGCAC 2690 Query 188954 AACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACAT 189013 || || ||| | || || |||||| | || || ||| | | ||||| |||| | | | Sbjct 2691 AAAAGGGCATTATCTACATTGATGAAATTGACAAGATTACCCGTAAATCTGAAAACCCTT 2750 Query 189014 CCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAG 189073 | ||||| || ||||| |||||||| || || || ||||| || || ||||| ||||||| Sbjct 2751 CGATTACACGTGATGTGTCTGGCGAGGGCGTGCAACAAGCATTGTTGAAAATGATTGAAG 2810 Query 189074 GTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTG 189133 |||| |||||| | |||| ||||||||||| |||||||| || || ||||| | || Sbjct 2811 GTACGGTTGCGTCAATTCCGCCTCAAGGTGGACGTAAACATCCACAGCAAGAGTTTATTC 2870 Query 189134 AAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACA 189193 || | ||||| | |||||||||||||| |||||| || || |||||||||||| Sbjct 2871 AAGTTGATACTGCAAATATCTTGTTTATCTGTGGTGGTGCATTCTCTGGTCTTGAAAAAG 2930 Query 189194 TTAT-CAAGAGACG-CGCTACAAAATCAACTTTAGGTTTTGATGATAGTGTAGATAAAGT 189251 || | ||| | ||| | | ||| | || || || | | ||| | || | Sbjct 2931 TTGTGCAACA-ACGTCAAGAAAAAGGTGGCATT-GGCTTCACCGCAAACGTAAAGAA--T 2986 Query 189252 ACAAGAAGAAATCAAGGATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGT 189311 | |||| || | ||| | | | || |||||| || || || | |||| | || Sbjct 2987 A-AAGACGATAGTAAGAAAGTATCTGAATTATTCCGTCAAGTTGAAGCTGCAGATTTGGT 3045 Query 189312 TAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAACAA 189371 || | ||||||||||||||| || ||||| ||| |||| || || ||||| ||| | | Sbjct 3046 GAAATTTGGTTTAATTCCAGAGTTCATTGGTCGTTTACCTGTGATTGCAACACTTGAAGA 3105 Query 189372 ACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCGCAAAACGC 189419 ||||||| ||| || ||||| | |||||||| || || |||| || Sbjct 3106 GCTTGATCAAGAAGCCTTGATGCAGATTTTAACAGAACCAAAAAATGC 3153 >seq1057 Length=6728 Score = 100 bits (110), Expect = 9e-16 Identities = 196/286 (69%), Gaps = 13/286 (5%) Strand=Plus/Minus Query 182238 TCGAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGC 182297 ||| || ||||| || | ||||| || |||||||| || ||||| | | | || Sbjct 3063 TCGTGCATTACCAGACGTGAGAGATGGTTTAAAACCTGTTCATCGTCGTGTGCTGTTCGC 3004 Query 182298 TTTATGGGATTTAGG-AATG-CTACCTCATAAACCATATCGAAAATCAGCAACAGTGAAT 182355 | | || ||||| || | ||| | | ||| | ||| |||||| ||| || | Sbjct 3003 TATGCACGAGTTAGGCAACGACTA--TAACAAAGCCTATAAAAAATCTGCACGTGTTGTT 2946 Query 182356 GGCCACGTAATGGGTAATTTCCATCCACATGGTGATAC------TTATGGTGTAATGGTA 182409 || ||||||| ||||| | || |||||||||||| | ||||| ||| || Sbjct 2945 GGTGACGTAATCGGTAAATATCACCCACATGGTGATTCAGCTGTTTATGAAACAATTGTT 2886 Query 182410 AATATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGT 182469 |||| | | || || ||| | || |||| | | |||||||||||||||||||||||| Sbjct 2885 CGTATGGCTCAAGATTTTAGTCTACGTTATCAATTGGTTGATGGTCAGGGTAACTTTGGT 2826 Query 182470 AACCCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAG 182515 | | |||||||| | |||||||| ||||||||||| |||| Sbjct 2825 ---TCTGTCGATGGTGACAGCGCAGCAGCAATGCGTTATACCGAAG 2783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591835545388160