Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq1401 136 2e-27 seq2028 98.7 4e-16 >seq1401 Length=3734 Score = 136 bits (150), Expect = 2e-27 Identities = 398/605 (66%), Gaps = 15/605 (2%) Strand=Plus/Minus Query 1141 GGCATCGTGTCGACGTCATGGCCGTCTGTGCGGCATGAGTGCAACGTCAACATGGGCCTG 1200 || ||||||||||| ||||| | |||||| | ||||| || ||| |||||| | Sbjct 1415 GGGATCGTGTCGACCGGCTGGCCCGCGGTGCGGGACCAGTGC--CG-CAAGATGGGCGTC 1359 Query 1201 TTTTTCGATCAGTGGCAGGACGACCTCGGGAAGCTGGTTTGCGCCAAACGATCCGACGGT 1260 | ||| | ||||||| | ||||||| | | |||||| || || ||| Sbjct 1358 CGTCACGACGAATGGCAGGCAGGCCTCGGGCGCGCGATGCTCGCCAAGCGCGCCAGCGGA 1299 Query 1261 CTGTTCGCCGCCGACATGTTCGCGATG------TCGGTGCCACGCCAGACGGGTAAAACG 1314 |||| |||||||| ||| || || ||| | |||||| || || ||| Sbjct 1298 CTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACG 1239 Query 1315 TACTTCCTCGGCGCGCTGGTTTTCGCGCTGTGCAAGATGAATCCCG--GCACGACCGTGA 1372 | | | |||| || | | ||||| || |||| || ||||| || | || || | Sbjct 1238 TTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCT-TCCCGAAGCTC-ACGGTCA 1181 Query 1373 TTTGGACGGCGCACCGCACCCGCACCGCGGCGGAAACGTTCAAGAGCATGCAGGCGCTCG 1432 | ||||| ||||||| | |||||||| | || |||||| || |||||| ||| Sbjct 1180 TCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCAGGGCTTCG 1121 Query 1433 CGCTGC-GTGAAGAGATCGCGCCGCACGTGCAGCAAGTCCTCACCGGCAACGGTAAAGAG 1491 | | | | | | || | || ||||| | | ||| ||| | | ||||| | || Sbjct 1120 CCCAGAAGCGGA-AGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAG 1062 Query 1492 GCTGTCCTGTTCACGAACGGCTCACGGATCCTGTTCGGCGCCCGTGAAAAAGGCTTCGGT 1551 || |||| ||||||||| |||||| ||||||| ||||| || |||||||| Sbjct 1061 CAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGC 1002 Query 1552 CGTGGTTTCGCGAAGGTCGACGTGCTGATCTTCGACGAGGCGCAGATTCTCACCGAAAAC 1611 || || ||||| |||||||| || | ||| ||||||||||| ||| | | || Sbjct 1001 CGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAG 942 Query 1612 GCAATGGACGACATGGTGCCGGCGACGAACGCGTCGCCGAACGCGCTAATCCTGCTGGCC 1671 || | || ||||||||||| || || ||||| ||| |||| |||| ||| | ||| Sbjct 941 GCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATG 882 Query 1672 GGCACACCGCCGAAGCCAACCGACCCGGGTGAGGTGTTCACCAATCTGCGGCAGGAAGCG 1731 ||||| ||||| ||| |||||| || || | |||| || | || | |||||| Sbjct 881 GGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTCCGCACCCGCCGAAACGAAGCG 822 Query 1732 CTCGA 1736 |||| Sbjct 821 ATCGA 817 >seq2028 Length=10780 Score = 98.7 bits (108), Expect = 4e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 1518 GATCCTGTTCGGCGCCCGTGAAAAAGGCTTCGGTCGTGGTTTCGCGAAGGTCGACGTGCT 1577 |||| |||||||||| ||||| || ||||| ||||| |||| |||||||| | Sbjct 6599 GATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGA 6540 Query 1578 GATCTTCGACGAGGCGCAGATTCTCACCGAAAACGCAATGGACGACATGGTGCCGGCGAC 1637 | ||||||| ||||||||||| || ||||| || || |||| |||||||| | ||||| Sbjct 6539 GGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGAC 6480 Query 1638 GAAC 1641 |||| Sbjct 6479 GAAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201437389680240