Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value seq802 87.8 2e-12 >seq802 Length=2299 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTCG 114527 ||||| || |||||||| | || || || | ||| |||||| |||| |||||||| Sbjct 977 GGCCCCGGTCGTGGCTCGGGCGCGGGATCCATGGTCGCCTACGCCATGCGCATCACCGAT 1036 Query 114528 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCCG 114585 |||| ||| | || ||| || || |||||||| || ||||||| || ||| | || Sbjct 1037 CTCGATCCGCTGCAGCACGGACTCATCTTCGAGCGATTCCTCAACCCCGATCGCGTCTCG 1096 Query 114586 ACTTCCCCGACATCGACGTCGACTTC 114611 | | |||||| |||||||||||||| Sbjct 1097 A--TGCCCGACTTCGACGTCGACTTC 1120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494482914555600