Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq1401 145 3e-30 seq2028 109 2e-19 >seq1401 Length=3734 Score = 145 bits (160), Expect = 3e-30 Identities = 353/519 (68%), Gaps = 22/519 (4%) Strand=Plus/Minus Query 1712 CGACCAATGGCAGGACGACCTCGGAAAGCTGGTATGC--GCCAAGCGATCCGACGGCCTG 1769 |||| ||||||||| | |||||| || | |||| |||||||| || ||| ||| Sbjct 1353 CGACGAATGGCAGGCAGGCCTCGGGC-GCGCG-ATGCTCGCCAAGCGCGCCAGCGGACTG 1296 Query 1770 TACGCCGCCGACATGTTCG----CA--ATGTCGATCCCGAGGCAGACAGGCAAGACCTAC 1823 |||||||||| ||| || || || |||||| | ||| |||||||| | | Sbjct 1295 TACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTC 1236 Query 1824 TTTCTCGGCGCGATCGTGTTTGCCCTCTGCAAGATGACTCCCGGTACA-ACGGTCATCTG 1882 |||| ||||| | || |||||||||| || ||||| | ||||||||||| Sbjct 1235 ACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCT-TCCCGAAGCTCACGGTCATCTG 1177 Query 1883 GACGGCGCACCGGACACGTACGGCCGCTGAGACGTTCAAGAGTATGCAGGCGCTCGCCAA 1942 ||| ||||||| | || || || ||||||||| || |||||| ||||| | Sbjct 1176 GACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCAGGGCTTCGCCCA 1117 Query 1943 GC-GCGAGCAGATCGCCCCGCACATCTTGAACGTGCACACGGGCAACGGCAAAGAAGCCG 2001 | ||| | || | |||||||| ||| | | | | | | ||||| | | ||| | Sbjct 1116 GAAGCG-GAAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCA-GCAGCAG 1059 Query 2002 -TGTTGTTCACCAACGGCAGCCGAATCCTGTTCGGCGCTCGTGAGAAAGGTTTCGGCCGC 2060 | |||| |||||| ||| ||| ||||||| || || ||| || ||||||||| Sbjct 1058 ATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGC 999 Query 2061 GGTTTCGCCAAGGTCGACGTTCTGATTTTCGACGAGGCTCAGATCCTCAGTGAAAACGCA 2120 || |||||| |||||||| || | ||| ||||| ||||||||| | | || || Sbjct 998 GGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCC 939 Query 2121 ATGGACGACATGGTTCCGGCGACCAACGCCTCGCCTAAC--GGTC-TGATCCTGTTCGCG 2177 | || |||||||| || || |||||||||||| ||| | || | |||||| | | Sbjct 938 CTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGAT---G 882 Query 2178 GGCACCCCGCCGAAGCCGACAGATCCCGGCGAGGTGTTC 2216 ||||||||||| || || |||||||| | |||| Sbjct 881 GGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 109 bits (120), Expect = 2e-19 Identities = 155/218 (71%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 2006 GTTCACCAACGGCAGCCGAATCCTGTTCGGCGCTCGTGAGAAAGGTTTCGGCCGCGGTTT 2065 |||| |||||||||| ||| ||||||||||||||||| || ||||| || || || Sbjct 6617 GTTCCGCAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTT 6558 Query 2066 CGCCAAGGTCGACGTTCTGATTTTCGACGAGGCTCAGATCCTCAGTGAAAACGCAATGGA 2125 || | |||||||| | | | ||||| ||||| |||||||| | || || || |||| Sbjct 6557 CGACGAGGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGA 6498 Query 2126 CGACATGGTTCCGGCGACCAAC--GCCTCGCCTAA-------CGGTCTGATCCTGTTCGC 2176 |||||||| | ||||| ||| | |||| | || || ||| | | ||| Sbjct 6497 AGACATGGTCGCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCAT 6438 Query 2177 GGGCACCCCGCCGAAGCCGACAGATCCCGGCGAGGTGT 2214 |||||| || ||| | |||| ||||| ||||||| || Sbjct 6437 GGGCACGCCCCCGCGGGCGACTGATCCTGGCGAGGAGT 6400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190820483442360