Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_024147.1 Length=57315 Score E Sequences producing significant alignments: (Bits) Value seq1401 215 2e-51 seq2028 123 9e-24 >seq1401 Length=3734 Score = 215 bits (238), Expect = 2e-51 Identities = 399/577 (69%), Gaps = 14/577 (2%) Strand=Plus/Minus Query 706 GGCATCGTGTCGACGGCCTGGCCGTCGGTGCGCGCGACGTGCAGCGCGATGGGCCTCGGG 765 || ||||||||||| | |||||| ||||||| | |||| || ||||||| || | Sbjct 1415 GGGATCGTGTCGACCGGCTGGCCCGCGGTGCGGGACCAGTGCCGCAAGATGGGCGTCCGT 1356 Query 766 TTCGACCTGTGGCAGGACGACCTCGG-CAAGCTGATTTGCGCCAAGCGCAGCGACGGCCT 824 |||| ||||||| | |||||| | || ||| |||||||||| | ||| || Sbjct 1355 CACGACGAATGGCAGGCAGGCCTCGGGCGCGC-GATGCTCGCCAAGCGCGCCAGCGGACT 1297 Query 825 GTACGCGGCCGACATGTTCG----CA--ATGTCGATCCCGCGGCAGACCGGCAAGACG-- 876 |||||| |||| ||| || || || |||||| || ||| |||||||||| Sbjct 1296 GTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTT 1237 Query 877 CACCTGCTCGGCGCGCTCGTGTTCGCGCTGTGCATCAAGACGCCTAACACAACGGTGATC 936 |||| |||| || || | ||||| || ||||||| || || ||||| ||| Sbjct 1236 CACCA--TCGGGTCGATCATCTTCGCCCTCTGCATCATCTTCCCGAAGCTCACGGTCATC 1179 Query 937 TGGACGGCGCACCGGACCCGCACGGCCGCAGAGACTTTCC-GCAGCATGCAGGGCCTCGC 995 ||||| ||||||| ||||||| || ||||| ||| | || |||||||| |||| Sbjct 1178 TGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGC-TGCAGGGCTTCGC 1120 Query 996 CAAGCAGGACAAGATCGCCCCGCACGTGCAGAACGTGCACACCGGCAACGGCAAAGAGGC 1055 | || || ||| | |||||||| | | | | | | | | ||||| | || Sbjct 1119 CCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAGCA 1060 Query 1056 CGTGCTGTTTAAGAACGGTTCGCGCATCCTGTTCGGCGCCCGCGAGCGCGGGTTCGGTCG 1115 | || |||||||| || || ||| ||||||| ||||||||| ||| ||||| || Sbjct 1059 GATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCG 1000 Query 1116 TGGGTTCGCCGGTGTCGACGTCCTGATTTTCGACGAGGCGCAGATCCTCACCGAGAACGC 1175 || |||||||||||||||||| || | ||| ||||||||||||||| | | || || Sbjct 999 CGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGC 940 Query 1176 GATGGACGACATGGTGCCCGCGACGAACGCGGCGCCTAACCCGCTGATCCTGCTGGCCGG 1235 | || |||||||||||||| || ||||| || |||||||| ||| | ||| || Sbjct 939 CCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATGGG 880 Query 1236 TACGCCGCCGAAACCGACGGACCCCGGCGAGGTGTTC 1272 || ||||| || ||||||||||| | |||| Sbjct 879 CACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 123 bits (136), Expect = 9e-24 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1081 ATCCTGTTCGGCGCCCGCGAGCGCGGGTTCGGTCGTGGGTTCGCCGGTGTCGACGTCCTG 1140 ||| |||||||||| || ||| |||||||||| ||||| |||| || |||||| || | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1141 ATTTTCGACGAGGCGCAGATCCTCACCGAGAACGCGATGGACGACATGGTGCCCGCGACG 1200 | ||||| |||||||||||||| |||||||| ||| |||| |||||||| | |||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 1201 AAC 1203 ||| Sbjct 6478 AAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183278412149580