Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq1401 120 1e-22 seq2028 91.5 6e-14 >seq1401 Length=3734 Score = 120 bits (132), Expect = 1e-22 Identities = 385/584 (66%), Gaps = 25/584 (4%) Strand=Plus/Minus Query 1378 GGCATCGTGTCGACGTCGTGGCCCGCTGTGCGTCACGAGTGCAACGTCAACATGCGGCTG 1437 || ||||||||||| |||||||| ||||| || ||||| || ||| ||| ||| | Sbjct 1415 GGGATCGTGTCGACCGGCTGGCCCGCGGTGCGGGACCAGTGC--CG-CAAGATG-GGC-G 1361 Query 1438 TTCTTC--GATCAGTGGCAGGACGACCTCGGGAAGCTGGTTTGCGCCAAACGATCCGACG 1495 | | || || | ||||||| | ||||||| | | |||||| || || || Sbjct 1360 TCCGTCACGACGAATGGCAGGCAGGCCTCGGGCGCGCGATGCTCGCCAAGCGCGCCAGCG 1301 Query 1496 GTCTGTTCGCGGCCGACATGTTCGCGATG------TCGGTGCCACGTCAGACAGGCAAAA 1549 | |||| ||| |||| ||| || || ||| | || ||| ||||| | Sbjct 1300 GACTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGA 1241 Query 1550 CGTACTTCCTCGGTGCGCTGGTGTTCGCGCTGTGCAAGATGAACGCCG--GCACGACGGT 1607 ||| | | |||| || | | ||||| || |||| || | ||| || | ||||| Sbjct 1240 CGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTTC-CCGAAGCTC-ACGGT 1183 Query 1608 GATCTGGACTGCGCACCGCACCCGCACCGCGGCCGAAACGTTCAAGAGCATGCAGGCGCT 1667 |||||||| ||||||| | |||||||| | ||| |||||| || |||||| ||| Sbjct 1182 CATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCAGG-GCT 1124 Query 1668 CTCGCTGCGCGAAG----AGATCGCACCGCACATCGAGCAGGTTCTCACCGGCAACGGTA 1723 |||| | |||| || | || ||||| ||| |||| | | | | ||||| Sbjct 1123 -TCGC--CCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGC 1067 Query 1724 AAGAGGCCGTGCTGTTCACCAACGGTTCTCGAATCCTGTTCGGCGCCCGCGAAAAGGGCT 1783 | || | |||| ||||| || || ||| ||||||| |||||||| |||| Sbjct 1066 AGCAGCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCT 1007 Query 1784 TCGGTCGTGGTTTCGCGAAGGTCGACGTGCTGATTTTCGACGAGGCGCAGATTCTCACCG 1843 |||| || || ||||| |||||||| || | ||| ||||||||||| ||| | Sbjct 1006 TCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCA 947 Query 1844 AGAACGCAATGGACGACATGGTGCCGGCGACGAACGCGTCACCTAACGCGCTGATCCTGC 1903 | || || | || ||||||||||| || || ||||| || ||| |||| ||| | | Sbjct 946 ACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCC 887 Query 1904 TGGCCGGCACACCGCCGAAGCCGACCGATCCCGGTGAGGTGTTC 1947 || ||||| ||||| || ||| ||||| || | |||| Sbjct 886 TGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 91.5 bits (100), Expect = 6e-14 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1756 ATCCTGTTCGGCGCCCGCGAAAAGGGCTTCGGTCGTGGTTTCGCGAAGGTCGACGTGCTG 1815 ||| |||||||||| || || || ||||| ||||| |||| |||||||| | | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1816 ATTTTCGACGAGGCGCAGATTCTCACCGAGAACGCAATGGACGACATGGTGCCGGCGACG 1875 | ||||| ||||||||||| || |||||||| || |||| |||||||| | |||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 1876 AAC 1878 ||| Sbjct 6478 AAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200381436913140