Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3658 172 1e-37 seq3618 123 5e-23 seq3660 100 6e-16 >seq3658 Length=1447888 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| |||||||| || ||||| || || || |||| Sbjct 41240 TACCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAG 41299 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| |||||||| ||||| |||||||| || ||||| | Sbjct 41300 AGAGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTG 41359 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || ||||| ||||| ||||| ||||||||||| || || || || | Sbjct 41360 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCA 41419 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||||||| || ||||| || || | ||||| || || || |||||| Sbjct 41420 CCTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 41469 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| || |||||||| || || ||||| ||||| || Sbjct 43479 CCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGAC 43538 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || ||||| |||||||| ||||| |||||||| |||||||| || Sbjct 43539 AAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGA 43598 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| || || || || ||||| || || | ||| || Sbjct 43599 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACC 43658 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || || | ||||| || || || |||||| Sbjct 43659 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| ||||| | || || || || || ||||| || || || || || Sbjct 41744 CCACCTCTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41803 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| ||||| |||||||| ||||| ||||| || |||||||| || Sbjct 41804 AAGGTGCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGA 41863 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||||||||| || || ||||||||||| || ||| | ||| || Sbjct 41864 ATTCCTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACC 41923 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| || || |||||||| Sbjct 41924 TCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || || || || |||||||| || || || || || ||| | | || Sbjct 42257 CGGAGGACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA 42316 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 42317 TCCTCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTG 42376 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || || || ||||| || ||| || ||| || || | || || Sbjct 42377 TCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATG 42436 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || || ||||| Sbjct 42437 GTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||| || Sbjct 41603 CCAGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCC 41662 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || || | ||| ||||| | || || ||||| || ||||| Sbjct 41663 TTGACGTTCTCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAA 41722 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 41723 GTCTTGACGAAGATCTGCATT 41743 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| || ||||||||||| ||||||||||| |||||||| || Sbjct 42101 TTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTG 42160 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || || ||| | ||| || || | || || ||||| || || Sbjct 42161 GCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGTG 42220 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||| || || || |||||||| Sbjct 42221 AGCGTTTTCACGAAAATCTGCAT 42243 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| ||||||||||||||||| || ||||| || || ||||| |||||||| Sbjct 43338 CCAGCGAAGATAAGTCTTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43397 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || || || || ||| ||||| | || || ||||| || || | Sbjct 43398 TTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGA 43457 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 43458 GTCTTGACGAAGATCTGCATT 43478 >seq3618 Length=512689 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || || || || || ||||| || || || || || ||| | | || Sbjct 495167 CGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA 495108 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| |||||||| ||||| |||||||| ||||||| || ||||||||||| Sbjct 495107 TCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTG 495048 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || || || || || || || || ||| || || | || || Sbjct 495047 TCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATG 494988 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | ||||| || || || |||||| Sbjct 494987 GTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 494952 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || || || || || ||||| || || || || || ||| | | || Sbjct 509351 CGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA 509292 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||| |||| ||||| |||||||| ||||||| || ||||||||||| Sbjct 509291 TCCTCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTG 509232 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || || || || || || || || ||| || || | || || Sbjct 509231 TCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATG 509172 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | ||||| || || || |||||| Sbjct 509171 GTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 509136 >seq3660 Length=1640336 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||||||| |||||||| || ||||||||||| ||||| ||||| || Sbjct 486263 CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 486322 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || ||||| | || ||||| | || || ||||| || |||| Sbjct 486323 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 486382 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 486383 GTCTTGACGAAGATTTGCAT 486402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981781032644130