Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3658 105 6e-18 seq3618 105 6e-18 >seq3658 Length=1447888 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||||||||| || ||||| ||| | || | | | ||||| || Sbjct 42266 AAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA-TCCTCAAG 42324 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | ||||| | ||||| || |||||||| ||||||||||| ||| Sbjct 42325 TTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGGAT 42384 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | | || || |||| ||||| ||| || || Sbjct 42385 CTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTTTCC 42444 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 42445 AGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| |||| | || || ||||| || ||||| ||||||||| Sbjct 41086 TCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTG 41145 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | ||||| | || || || |||| ||||| | Sbjct 41146 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATG 41205 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || ||||| |||||||| Sbjct 41206 GTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || |||||||||||| || || | | | ||||| || ||||| || Sbjct 43509 GTAGATTCCTTTTGGATATTGTAATCGGACAAAGTACGTCCA-TCCTCAAGTTGCTTTCC 43567 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| | ||||| || || || || ||||||||||| |||||| ||| Sbjct 43568 AGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTT 43627 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | || || || |||| ||||| ||| || || || || || Sbjct 43628 GACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 43687 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 43688 CTTCACGAAGATTTGCAT 43705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| ||||| || || | || ||| || |||||||| || Sbjct 42503 GTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCTTCAAGCTGCTTTCCG 42562 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| | |||||| || || ||||| ||||||||||| |||||| ||| Sbjct 42563 GCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTG 42622 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | | || || |||| ||||| ||| || || || || || Sbjct 42623 ACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGCGTC 42682 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 42683 TTCACGAAGATTTGCAT 42699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || || ||| | | | || ||||| | Sbjct 41767 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGTCCA-TCTTCGAGTT 41825 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | ||||| | |||||| || || || || ||||||||||| |||| Sbjct 41826 GCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATCT 41885 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||| | || || || || | |||| ||| || |||| Sbjct 41886 TAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACCTCAAGAGTGATGGTCTTTCCGG 41945 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || ||||| |||||||| Sbjct 41946 TGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | ||||| | |||||| || |||||||| ||||||||||| ||| || Sbjct 42100 CTTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTC-TTGAATTT 42158 Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | | ||| | | ||| | ||||| | || || || |||| |||| ||| || |||| Sbjct 42159 TGGCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGG 42218 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||||||||| || Sbjct 42219 TGAGCGTTTTCACGAAAATCTGCATGCCT 42247 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| | ||||| || || ||||| ||||||||||| ||||| | Sbjct 41603 CCAGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCC 41662 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| | || || || |||| ||||| ||| || || |||| | Sbjct 41663 TTGACGTTCTCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAA 41722 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 41723 GTCTTGACGAAGATCTGCAT 41742 >seq3618 Length=512689 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| || ||||| ||| | || | | | ||||| || Sbjct 495158 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA-TCCTCAAG 495100 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | ||||| | ||||| || | ||||| ||||||||||| ||| Sbjct 495099 TTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGGAT 495040 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||||| | || || |||| ||||| ||| || || Sbjct 495039 CTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTTCC 494980 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| || ||||| Sbjct 494979 GGTGAGGGTCTTCACGAAGATTTGCAT 494953 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| || ||||| ||| | || | | | ||||| || Sbjct 509342 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCA-TCCTCAAG 509284 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| | ||| | ||||| | ||||| || | ||||| ||||||||||| ||| Sbjct 509283 TTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGGAT 509224 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||||| | || || |||| ||||| ||| || || Sbjct 509223 CTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTTCC 509164 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| || ||||| Sbjct 509163 GGTGAGGGTCTTCACGAAGATTTGCAT 509137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398623070800