Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3650 109 1e-18 seq1526 104 6e-17 >seq3650 Length=1244161 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| || |||| || || |||||||||||| | || || || || || ||||| || Sbjct 105211 CATCTGGATGATAACGACGTTGTTCTGTTCAATCGTCAGCCTTCTCTTCACAAAATTTCA 105152 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || ||| |||| | || ||| | | ||| ||||||||||| |||| |||| Sbjct 105151 ATTATGAGTCATCGCGCGAAGGTAATGCCGGGAAGAACATTTCGATTCAATGAGTGTGCA 105092 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| || || ||||| ||||| || ||||||||||||||| ||||| | |||||| || Sbjct 105091 TGTACACCATACAATGCCGATTTCGACGGAGATGAAATGAATTTGCATTTGCCTCAAACA 105032 >seq1526 Length=5360 Score = 104 bits (114), Expect = 6e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| || |||| || || |||||||||||| | || || || || || ||||| || Sbjct 5103 CATCTGGATGATAACGACGTTGTTCTGTTCAATCGTCAGCCTTCTCTTCACAAAATTTCA 5044 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || ||| |||| | || ||| | | ||| |||||||| || |||| |||| Sbjct 5043 ATTATGAGTCATCGCGCGAAGGTAATGCCGGGAAGAACATTTCGTTTCAATGAGTGTGCA 4984 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| || || ||||| ||||| || ||||||||||||||| ||||| | |||||| || Sbjct 4983 TGTACACCATACAATGCCGATTTCGACGGAGATGAAATGAATTTGCATTTGCCTCAAACA 4924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186756993836870