Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3658 86.0 4e-12 >seq3658 Length=1447888 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || | ||| || || ||| || || |||||||| || || Sbjct 41744 CCACCTCTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41803 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || || | ||| ||||| || || || | | |||||||||| | || Sbjct 41804 AAGGTGCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGA 41863 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || |||| ||| ||| |||||| | ||| || Sbjct 41864 ATTCCTTCCTTGTCTTGAATCTTAGCCTTCA-CATTTTCAATGGTGTCAGAGGCTTCGAC 41922 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || || || |||||||||||| Sbjct 41923 CTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATA 41971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328689297686400