Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3658 141 2e-28 seq3662 84.2 5e-11 >seq3658 Length=1447888 Score = 141 bits (156), Expect = 2e-28 Identities = 151/197 (77%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||||||||| ||||| ||| ||||| | ||| Sbjct 41454 CAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTGGAGGCTTCCGACACCATTGAAAA 41395 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| ||||| ||||| || ||| ||||||||||||| Sbjct 41394 TGTCAAAGCCAA-GATCCAAGACAAAGAGGGAATCCCACCAGACCAGCAAAGACTTATCT 41336 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| |||||||| | ||||||||| | || | | || |||||| ||||||| |||| Sbjct 41335 TCGCTGGAAAGCAACTCGAAGATGGACGTACACTCTCTGACTACAACATCCAGAAGGAGT 41276 Query 206363 CTACTCTTCACCTTGTT 206379 ||||||||||| | ||| Sbjct 41275 CTACTCTTCACTTGGTT 41259 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || |||||| | || || ||| |||||| Sbjct 41967 CAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAAGCCTCTGAC 41908 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||||||| || || || Sbjct 41907 ACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 41848 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| |||||||| |||||||| | ||||||||| | || ||| | || |||||| || Sbjct 41847 AGACTCATCTTCGCTGGAAAGCAACTCGAAGATGGACGCACCTTGTCGGACTACAACATC 41788 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || ||||| || ||| Sbjct 41787 CAGAAGGAGTCGACCCTTCATCTCGTT 41761 Score = 125 bits (138), Expect = 2e-23 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || |||||||| ||||| ||||| ||||| ||| ||||| | || Sbjct 43918 AAAACGTTGACTGGAAAAACCATCACCTTGGAGGTGGAGGCTTCCGACACCATTGAGAAT 43859 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| ||||| ||||| || || || ||||| ||||| Sbjct 43858 GTCAAAGCCAA-GATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAGAGACTCATCTT 43800 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | ||||| ||||| ||| | | || ||||| ||||||| ||||| Sbjct 43799 CGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTTTCGGACTACAATATCCAGAAGGAGTC 43740 Query 206364 TACTCTTCACCTTGTT 206379 |||||||| || ||| Sbjct 43739 CACTCTTCATCTCGTT 43724 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || ||||| | || || ||| |||||| Sbjct 41237 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCTGAC 41178 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| || || ||| ||| Sbjct 41177 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAA 41118 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||||||||||||| | || |||||| |||| ||| | || |||||| || Sbjct 41117 CGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAACATC 41058 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| || ||| | | ||||| Sbjct 41057 CAAAAGGAGTCAACTCTTCATCTCGTTCTTCGTCTTCG 41020 Score = 113 bits (124), Expect = 1e-19 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || |||||||| ||||| || ||||| | || || ||| ||||||||| | || Sbjct 42684 AAGACGCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCTGACACCATTGAGAAT 42625 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || ||||| || || || || ||||| ||||| Sbjct 42624 GTCAAAGCCAA-GATCCAAGACAAGGAAGGGATCCCACCAGATCAGCAGAGACTCATCTT 42566 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | ||||| ||||| ||| | | || || || ||||||| ||||| Sbjct 42565 CGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTCTCGGACTATAATATCCAGAAGGAGTC 42506 Query 206364 TACTCTTCACCTTGTT 206379 |||||||| || ||| Sbjct 42505 CACTCTTCATCTCGTT 42490 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| | || || ||| ||||||||| | || Sbjct 42456 AAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCTGACACCATTGAGAAC 42397 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || |||||||| || || |||||||| ||||| Sbjct 42396 GTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAGCAAAGACTCATCTTT 42337 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | || |||||| | ||| | |||| |||||| ||||||||||||| Sbjct 42336 GCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAACATCCAGAAAGAGTCC 42277 Query 206365 ACTCTTCA 206372 || || || Sbjct 42276 ACCCTCCA 42269 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || || || | || || ||| ||| || Sbjct 42924 CAGATCTTCGTCAAGACCCTCACTGGAAAGACTATTACCCTCGAGGTCGAAGCTTCCGAT 42865 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| ||||| ||||| || || || Sbjct 42864 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAG 42805 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || |||||||||||||| | || |||||| |||| ||| | || ||||| || Sbjct 42804 AGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGACGGACCTTGTCGGACTACAATATC 42745 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| || ||| | | ||||| Sbjct 42744 CAAAAGGAGTCCACTCTTCATCTCGTTCTCCGTCTTCG 42707 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || |||||||| ||||| ||||||| ||||||||| | | ||| ||||| ||||| Sbjct 42490 AACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCTTC 42549 Query 204823 CAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||||| || Sbjct 42550 AAGCTGCTTTCCGGCGAAGATGAG 42573 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| || |||||||| ||||| || |||| || ||||| | ||| ||| Sbjct 41020 CGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGACAAGGTC 41079 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || ||||||||||||||||| || | |||||||| Sbjct 41080 CGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTG 41123 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || |||||||| ||||| ||||||| ||| ||||| | | ||| ||||| ||||| Sbjct 43724 AACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCGTCTTC 43783 Query 204823 CAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||||| || Sbjct 43784 AAGCTGCTTTCCGGCGAAGATGAG 43807 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||||||||||||||| ||||||| || ||||||| | || | ||||||||| Sbjct 41259 AACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCTTC 41318 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || |||||||| ||||||||||| | ||| || Sbjct 41319 GAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTG 41351 >seq3662 Length=2005727 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101529 CGGCAGCTTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGA 101588 ||||| |||||| || || |||| ||||||||| | ||| || || | | | | | Sbjct 1704483 CGGCATTTTCAGCTACTTTACGGACGTAATTGTGACGCTTTTCATTACGAAGACGAGCAA 1704424 Query 101589 AACGAAGGGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTAT 101648 | |||| |||||||||||||| || ||||| ||||||||||| |||| ||| || | Sbjct 1704423 ACCGAACAGCAGATTGTCCTCCTCTTCCGTGCTTCTTTGGCAAGTCGACGGTAAATTTGT 1704364 Query 101649 GAAGAATTT 101657 |||||| || Sbjct 1704363 GAAGAACTT 1704355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181765228570070