Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 8e-15 >seq2 Length=2260 Score = 96.9 bits (106), Expect = 8e-15 Identities = 180/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 257250 TAGCCCGTACTGAGCGTAAAACTGGTACTGGATATGGTGGCTTTGAAGTGGATACAAA-- 257307 |||||||||||||||||||| | || || ||| | | ||||| | ||| | Sbjct 244 TAGCCCGTACTGAGCGTAAATCAGGACACGGTTATCATAGATTTGAGTTTTTTACCGATC 303 Query 257308 -AGGCGTAACACTAGAACAAGATTTGTATCGCCGTGACCTTACAATTAATGCAATTGCGT 257366 || || || ||||| | ||||| ||| |||||| | || || ||||| |||||| Sbjct 304 CAGATGTCACCTTAGAAGAGGATTTAATTCGTCGTGACTTAACCATCAATGCCATTGCGA 363 Query 257367 ATGATCCAGTACTACAAATTCACATCGATCCATACGGTGGTAAAGCTGATATCAAGAACA 257426 ||| || | ||| | | ||||| || ||| ||| |||| | | | | Sbjct 364 TGGATGAAGCAGGTCAAGTGTA---TGATCCTTATCATGGACAAGATGATTTAGCGCATA 420 Query 257427 AGATACTACGTCATGTTTCTGACCATTTTAAAGAAGATCCATTACGCGTGTTACGTCTTG 257486 | || |||||||| ||||| ||| |||| ||||||||| |||||||| | ||| | | Sbjct 421 AAATCCTACGTCACGTTTCAGACGCTTTTGCAGAAGATCCGTTACGCGTACTGCGTGTGG 480 Query 257487 CTCGATTTGCTACTCGTTATTCA 257509 |||| |||||| |||||||| || Sbjct 481 CTCGTTTTGCTGCTCGTTATGCA 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115118762559230