Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 9e-15 >seq2 Length=2260 Score = 95.1 bits (104), Expect = 9e-15 Identities = 178/256 (70%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 37935 CGTAATGGATCTTCAATAAATGCCTGTGATGTATGACGTAATGTTTTAAGTCCTAAGTCA 37994 ||||| |||||||| ||| || | ||| ||||||| ||||| | |||| ||| Sbjct 466 CGTAACGGATCTTCTGCAAAAGCGTCTGAAACGTGACGTAGGATTTTATGCGCTAAATCA 407 Query 37995 ACCTGACCACCAAAAGGATCTATA-ATTTCACCACTCTCAACATCCATCGCCATGGAATT 38053 | || ||| | ||||||| ||| | || ||| ||| |||||||| |||| ||| Sbjct 406 TCTTGTCCATGATAAGGATC-ATACACTTGACCTGCTTCA---TCCATCGCAATGGCATT 351 Query 38054 GATGGTTAGGTCTCTACGTGCCAAATCCTCTTCCAGAGTTACATCTGGA---CTAAAGCA 38110 |||||||| ||| | ||| ||||||||||| | || ||||||||| ||| | Sbjct 350 GATGGTTAAGTCACGACGAATTAAATCCTCTTCTAAGGTGACATCTGGATCGGTAA---A 294 Query 38111 TACCTCAAATCCTTTATGGCCTTCACCTGTTTTTCTTTCTGTGCGTGCAAGAGCGTACTC 38170 | |||||||| | || || | |||| ||| | || || || || || || || || Sbjct 293 AAACTCAAATCTATGATAACCGTGTCCTGATTTACGCTCAGTACGGGCTAGGGCATATTC 234 Query 38171 TTCTCTTGTTTCTGGG 38186 |||| |||||| |||| Sbjct 233 TTCTTTTGTTT-TGGG 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386859495726130