Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3263 129 8e-24 seq1971 125 1e-22 seq3649 122 1e-21 seq1032 118 2e-20 seq3654 114 2e-19 seq3651 113 6e-19 seq3667 111 2e-18 seq3657 111 2e-18 seq3650 111 2e-18 seq3665 107 3e-17 seq2563 104 3e-16 seq1985 100 4e-15 >seq3263 Length=30027 Score = 129 bits (142), Expect = 8e-24 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||||| |||||||||||||| ||||||||| | |||| ||||||| |||| ||| Sbjct 6138 CCATGTCAATCATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATCGCTGCCGAAGCCT 6079 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || | | ||||||||| || ||| | || || |||||||| |||| Sbjct 6078 CTCGTCTCGCTCATTACAACAAGCGATCGACAATCTCGTCTCGTGAAATCCAGACGGCCG 6019 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || |||||| | | || ||||| |||| |||||||||||||||||| |||| Sbjct 6018 TTCGTCTGATCCTTCCGGGAGAACTCGCCAAGCACGCCGTCTCCGAGGGAACCA 5965 >seq1971 Length=6788 Score = 125 bits (138), Expect = 1e-22 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||||| |||||||| ||||| ||||||||| | |||| ||||||| |||| ||| Sbjct 2634 CCATGTCAATCATGAATTCGTTCGTCAACGACGTCTTCGAGCGCATCGCTGCCGAAGCCT 2575 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || | | ||||||||| |||||| | || || |||||||| |||| Sbjct 2574 CTCGTCTCGCTCATTACAACAAGCGTTCGACGATCTCGTCTCGTGAAATCCAGACGGCCG 2515 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || |||||| | | || ||||| || | |||||||||||||||||| |||| Sbjct 2514 TTCGTCTGATCCTTCCGGGAGAACTCGCGAAGCACGCCGTCTCCGAGGGAACCA 2461 >seq3649 Length=974952 Score = 122 bits (134), Expect = 1e-21 Identities = 224/322 (70%), Gaps = 21/322 (7%) Strand=Plus/Plus Query 1455961 AAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAAC 1456020 || || ||| | || | ||||| || || || ||||| ||||| ||||||||||| ||| Sbjct 67271 AACGAAGTCAAGGTGTCGGAGGCTCGATTCTTCTACGGATTCCAAATCGCCATCGAGAAC 67330 Query 1456021 ATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAG 1456080 || ||||| || | |||||| || ||||| |||||| | || |||||| Sbjct 67331 ATTCACTCGGAGATGTACTCGAAGCTCATCGAAACCTACATTCGTGAT------GAGAAG 67384 Query 1456081 GACCACCT----CT-TTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || | ||| || ||| |||||| | | | | | | ||| ||||||||| Sbjct 67385 GAGCGCCTTACTCTGTTCAACGCCATTTTCGAGTTCGAATTCATCAAGAAGAAGGCCGAC 67444 Query 1456135 TGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 ||||| |||||||||||| |||| || ||| ||| || ||||| || ||| ||| Sbjct 67445 TGGGCTATGAAGTGGATCTCGGACAA-GAAGGCGTCG----TTCGCCGAACGTCTCATCG 67499 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||| ||||| ||||| || ||||| ||| || ||| | | ||||| ||||||| Sbjct 67500 CCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCGTTCGCCTCAATCTTCTGGCTCA 67559 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 ||||||| || |||||||| || Sbjct 67560 AGAAGCGAGGACTCATGCCAGG 67581 >seq1032 Length=2756 Score = 118 bits (130), Expect = 2e-20 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||| || ||||| || | | | | |||||||| || || Sbjct 642 ATCTACCGTGTTCTCAAGCAAGTTCACCCAGACACTG--GAGTC-TCCTCCAA--AG-CC 695 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||||||||||||| | |||| || |||| | |||||| | Sbjct 696 ATGTCCATCATGAACTCGTTTGTCAACGACGTCTTCGAGCGTATCGCTGCTGAGGCCTCT 755 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| || ||| | ||||| |||||||| || || Sbjct 756 CGTCTTGCTCACTACAACAAGCGTTCGACCATCTCTTCTCGCGAAATCCAGACGGCTGTC 815 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || ||||| |||| |||||| || || || || |||| Sbjct 816 CGTCTGATTCTTCCAGGAGAACTCGCCAAGCACGCTGTGTCTGAAGGAACCA 867 >seq3654 Length=1391273 Score = 114 bits (126), Expect = 2e-19 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||||| ||||||||||| || ||||||||| | |||| ||||||| ||||| Sbjct 380820 AAGGCCATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAACGCATCGCTGCCGAG 380879 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| || || | || |||||||||| || ||| | ||||| || || ||| Sbjct 380880 GCTTCTCGTCTTGCCCACTACAACAAGCGCTCAACCATCTCTTCCCGCGAAATTCAAACC 380939 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||||| | | || || |||||| ||||||||| || || || |||| Sbjct 380940 GCCGTCCGTTTGATCCTTCCAGGAGAGTTGGCCAAGCACGCCGTTTCTGAAGGAACCA 380997 Score = 105 bits (116), Expect = 1e-16 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||||| ||||||||||| || ||||||||| | |||| ||||||| ||||| Sbjct 669924 AAGGCCATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAACGCATCGCTGCCGAG 669865 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| || || | || |||||||||| || ||| | ||||| || || || Sbjct 669864 GCTTCTCGTCTTGCCCACTACAACAAGCGCTCAACCATCTCTTCCCGCGAAATTCAAACG 669805 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||||| | | || || |||||| ||||||||| || || || |||| Sbjct 669804 GCTGTCCGTTTGATCCTTCCAGGAGAGTTGGCCAAGCACGCCGTTTCTGAAGGAACCA 669747 >seq3651 Length=1278986 Score = 113 bits (124), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||| || ||||| ||||| | |||||||| | || Sbjct 355006 ATCTACCGTGTTCTCAAGCAAGTTCACCCAGAAACCGGAGTT---TCCTCCAA---GGCC 355059 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||| ||| | |||| ||||||| | ||||| Sbjct 355060 ATGTCTATCATGAACTCATTCGTCAATGACGTCTTCGAACGCATCGCTGCTGAGGCTTCC 355119 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||||||| || ||| | ||||| || ||||| || || Sbjct 355120 CGTCTTGCTCACTACAACAAGCGCTCAACCATCTCGTCCCGCGAAATTCAGACGGCTGTC 355179 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| |||||||| |||| Sbjct 355180 CGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGAACCA 355231 >seq3667 Length=2326506 Score = 111 bits (122), Expect = 2e-18 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | |||||||||||||||||||| ||||| ||| | |||| ||||||| | |||| Sbjct 1695460 CAAGGCTATGTCGATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATCGCCGCCGA 1695401 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 |||| ||| || || | || ||||||| | || ||| | ||||| || || || Sbjct 1695400 GGCCTCTCGTCTTGCTCACTACAACAAGAGATCGACCATCTCTTCCCGCGAAATTCAAAC 1695341 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || |||| | | || || || |||| |||||| ||||| ||||| |||| Sbjct 1695340 GGCCGTCCGTTTGATTCTTCCAGGAGAGCTCGCCAAGCACGCTGTCTCTGAGGGAACCA 1695282 >seq3657 Length=1321725 Score = 111 bits (122), Expect = 2e-18 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | |||||||||||||||||||| ||||| ||| | |||| ||||||| | |||| Sbjct 903803 CAAGGCTATGTCGATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATCGCCGCCGA 903744 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 |||| ||| || || | || ||||||| | || ||| | ||||| || || || Sbjct 903743 GGCCTCTCGTCTTGCTCACTACAACAAGAGATCGACCATCTCTTCCCGCGAAATTCAAAC 903684 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || |||| | | || || || |||| |||||| ||||| ||||| |||| Sbjct 903683 GGCCGTCCGTTTGATTCTTCCAGGAGAGCTCGCCAAGCACGCTGTCTCTGAGGGAACCA 903625 Score = 102 bits (112), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | |||||||||||||||||||| ||||| ||| | |||| ||||| | | |||| Sbjct 910718 CAAGGCTATGTCGATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATTGCCGCCGA 910659 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 |||| ||| || || | || ||||||| | || ||| | ||||| || || || Sbjct 910658 GGCCTCTCGTCTTGCTCACTACAACAAGAGATCGACCATCTCTTCCCGCGAAATTCAAAC 910599 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||| || |||| | | || || || |||| |||||| ||||| ||||| Sbjct 910598 GGCCGTCCGTTTGATTCTTCCAGGAGAGCTCGCCAAGCACGCTGTCTCTGAGGG 910545 Score = 102 bits (112), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | |||||||||||||||||||| ||||| ||| | |||| ||||||| | |||| Sbjct 915004 CAAGGCTATGTCGATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATCGCCGCCGA 915063 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| ||| || || | || ||||||| | || ||| | ||||| || || || Sbjct 915064 GGCGTCTCGTCTTGCTCACTACAACAAGAGATCGACCATCTCTTCCCGCGAAATTCAAAC 915123 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || |||| | | || || || |||| |||||| ||||| ||||| |||| Sbjct 915124 GGCTGTCCGTTTGATTCTTCCAGGAGAGCTCGCCAAGCACGCTGTCTCTGAGGGAACCA 915182 >seq3650 Length=1244161 Score = 111 bits (122), Expect = 2e-18 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||||| |||||||||||||||||||||||| | |||| || |||| | |||||| Sbjct 264127 CCATGTCCATCATGAACTCGTTTGTCAACGACGTCTTCGAGCGTATCGCTGCTGAGGCCT 264068 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || | || ||||||||| || ||| | ||||| |||||||| || | Sbjct 264067 CTCGTCTTGCTCACTACAACAAGCGTTCGACCATCTCTTCTCGCGAAATCCAGACGGCTG 264008 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||||| | | || ||||| |||| |||||| || || || || |||| Sbjct 264007 TTCGTCTGATTCTTCCAGGAGAACTCGCCAAGCACGCTGTGTCTGAAGGAACCA 263954 >seq3665 Length=2157650 Score = 107 bits (118), Expect = 3e-17 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | |||||||||||||||||||| ||||| ||| | |||| ||||||| | |||| Sbjct 994532 CAAGGCTATGTCGATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATCGCCGCCGA 994473 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| ||| || || | || ||||||| | || ||| | ||||| || || || Sbjct 994472 GGCATCTCGTCTTGCTCACTACAACAAGAGATCGACCATCTCATCCCGCGAAATTCAAAC 994413 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || || |||| | | || || || |||| |||||| ||||| ||||| |||| Sbjct 994412 CGCTGTTCGTTTGATTCTTCCAGGAGAGCTCGCCAAGCACGCTGTCTCTGAGGGAACCA 994354 Score = 102 bits (112), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | |||||||||||||||||||| ||||| ||| | |||| ||||||| | |||| Sbjct 985033 CAAGGCTATGTCGATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATCGCCGCCGA 985092 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| ||| || || | || ||||||| | || ||| | || || || || || Sbjct 985093 GGCATCTCGTCTTGCTCACTACAACAAGAGATCGACCATCTCATCCCGTGAAATTCAAAC 985152 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || || |||| | | || || || |||| |||||| ||||| ||||| |||| Sbjct 985153 CGCTGTTCGTTTGATTCTTCCAGGAGAGCTCGCCAAGCACGCTGTCTCTGAGGGAACCA 985211 Score = 93.3 bits (102), Expect = 6e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | ||||| |||||||||||||| ||||| ||| | |||| ||||| | | |||| Sbjct 945857 CAAGGCTATGTCCATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATTGCCGCCGA 945798 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| ||| || || | | ||||||| | || ||| | ||||| || || || Sbjct 945797 GGCATCTCGTCTTGCTCATTACAACAAGAGATCGACCATCTCATCCCGCGAAATTCAAAC 945738 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || || |||| | | || || || |||| |||||| ||||| ||||| |||| Sbjct 945737 CGCTGTTCGTTTGATTCTTCCAGGAGAGCTCGCCAAGCACGCTGTCTCTGAGGGAACCA 945679 >seq2563 Length=10588 Score = 104 bits (114), Expect = 3e-16 Identities = 131/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||||| ||||||||||| || ||||| ||| | |||| ||||||| | || Sbjct 101 CAAGGCCATGTCCATCATGAACTCATTCGTCAATGACGT-CTCGAACGCATCGCTGCTGA 159 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| || || || | || |||||||||| || ||| | ||||| || ||||| Sbjct 160 GGCTTCCCGTCTCGCTCACTACAACAAGCGCTCAACCATCTCGTCCCGCGAAATTCAGAC 219 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||||| | | || || || |||| ||||||||| |||||||| |||| Sbjct 220 GGCTGTCCGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGAACCA 278 >seq1985 Length=6629 Score = 100 bits (110), Expect = 4e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 ||||||||||||||||||||||| | |||| || |||| | |||||| ||| || | Sbjct 1 TCATGAACTCGTTTGTCAACGACGTCTTCGAGCGTATCGCTGCTGAGGCCTCTCGTCTTG 60 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 | | || ||||||||| || ||| | ||||| |||||||| || || || |||| Sbjct 61 CTCACTACAACAAGCGTTCGACCATCTCTTCTCGCGAAATCCAGACGGCTGTCCGTCTGA 120 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | | || ||||| |||| |||||| || || || || |||| Sbjct 121 TTCTTCCAGGAGAACTCGCCAAGCACGCTGTGTCTGAAGGAACCA 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177457221754540