Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_026598.1 Length=58211 Score E Sequences producing significant alignments: (Bits) Value seq1401 205 3e-48 >seq1401 Length=3734 Score = 205 bits (226), Expect = 3e-48 Identities = 401/579 (69%), Gaps = 18/579 (3%) Strand=Plus/Minus Query 706 GGCATCGTGTCGACGGCCTGGCCGTCGGTGTGTGCGACGTGCGCGGC--GATGGGCCTCG 763 || ||||||||||| | |||||| ||||| | | || | || || ||||||| || Sbjct 1415 GGGATCGTGTCGACCGGCTGGCCCGCGGTGCGGG--ACCAGTGCCGCAAGATGGGCGTCC 1358 Query 764 GGTTCGACCTGTGGCAGGACGACCTCGG-CAAGCTGATTTGCGCGAAGCGCGCCGACGGC 822 | |||| ||||||| | |||||| | || ||| ||| ||||||||| ||| Sbjct 1357 GTCACGACGAATGGCAGGCAGGCCTCGGGCGCGC-GATGCTCGCCAAGCGCGCCAGCGGA 1299 Query 823 CTGTACGCGGCCGACATGTTCG----CA--ATGTCGATCCCGCGGCAGACCGGCAAGACG 876 |||||||| |||| ||| || || || |||||| || ||| |||||||||| Sbjct 1298 CTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACG 1239 Query 877 CATCTGC-TCGGCGCGCTCGTGTTCGCGCTGTGCATCAAGACGCCTAACACGACGGTGAT 935 || | |||| || || | ||||| || ||||||| || || ||||| || Sbjct 1238 T-TCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTTCCCGAAGCTCACGGTCAT 1180 Query 936 CTGGACGGCGCACCGGACCCGCACGGCCGCAGAGACTTTCC-GCAGCATGCAGGGCCTCG 994 |||||| ||||||| ||||||| || ||||| ||| | || |||||||| ||| Sbjct 1179 CTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGC-TGCAGGGCTTCG 1121 Query 995 CCAAGC-GCGACAAGATCGCCCCGCACATCTTGAACGTGCACACCGGCAACGGCAAAGAG 1053 || || ||| ||| | |||||||| ||| | | | | | | ||||| | || Sbjct 1120 CCCAGAAGCGG-AAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAG 1062 Query 1054 GCCGTGCTGTTTAAGAACGGCTCGCGCATCCTGTTCGGCGCCCGCGAGCGCGGGTTCGGT 1113 | || ||||||||||| || ||| ||||||| ||||||||| ||| ||||| Sbjct 1061 CAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGC 1002 Query 1114 CGTGGGTTCGCCGGTGTCGACGTCTTGATTTTCGACGAGGCTCAGATCCTCACCGAGAAC 1173 || || |||||||||||||||||| || | ||| ||||| ||||||||| | | || Sbjct 1001 CGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAG 942 Query 1174 GCGATGGACGACATGGTGCCCGCGACGAACGCGGCGCCTAACCCGCTGATCCTGCTGGCC 1233 || | || |||||||||||||| || ||||| || |||||||| ||| | ||| Sbjct 941 GCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATG 882 Query 1234 GGTACGCCGCCGAAACCGACGGACCCCGGCGAGGTGTTC 1272 || || ||||| || ||||||||||| | |||| Sbjct 881 GGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186145487193420