Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_026603.1 Length=61251 Score E Sequences producing significant alignments: (Bits) Value seq1401 147 9e-31 seq2028 114 5e-21 >seq1401 Length=3734 Score = 147 bits (162), Expect = 9e-31 Identities = 261/374 (70%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 1758 ACGGTGATCTGGACTGCGCACCGTACCCGCACGGCGGGCGAGACGTTCC-GCAGCATGCA 1816 ||||| |||||||| ||||||| ||||||| | |||||||||| | || |||| Sbjct 1187 ACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGC-TGCA 1129 Query 1817 GGGCCTCGCC---AAGCGTGAGGAGATCGCCCCGCACATCTTGAACGTGCACACGGGCAA 1873 |||| ||||| ||||| ||| | |||||||| ||| | | | | | | || Sbjct 1128 GGGCTTCGCCCAGAAGCGGAAGGTG---GCCCCGCATATCCGGCAGATCCGCCGAGTGAA 1072 Query 1874 CGGCAAAGAGGCCGTGTACTTCACGAACGGTTCACGCATCCTGTTCGGCGCCCGTGAGAA 1933 ||| | || | ||||| |||||| || || ||| ||||||| ||||| ||| Sbjct 1071 CGGGCAGCAGCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTC 1012 Query 1934 GGGTTTCGGCCGCGGTTTCGCCAAGGTCGACGTGCTGATCTTCGATGAGGCGCAGATCCT 1993 || ||||||||||| |||||| |||||||| || | |||||||||||||||||| Sbjct 1011 CGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCT 952 Query 1994 CACGGAGAACGCGATGGACGACATGGTTCCCGCGACCAACGCCTCGCCTAACGCGCTGAT 2053 | | || || | || |||||||| ||||| |||||||||||| ||| |||| || Sbjct 951 CGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCAT 892 Query 2054 CCTGCTCGCCGGTACGCCGCCGAAGCCGAACGATCCCGGCGAGGTGTTCACGAACCTG-C 2112 | | || || || ||||| || ||| |||||||| | |||| || ||| | | Sbjct 891 CATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC-CGCACCCGCC 833 Query 2113 GCATGGACGCGATC 2126 | | || |||||| Sbjct 832 GAAACGAAGCGATC 819 >seq2028 Length=10780 Score = 114 bits (126), Expect = 5e-21 Identities = 145/199 (73%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 1911 ATCCTGTTCGGCGCCCGTGAGAAGGGTTTCGGCCGCGGTTTCGCCAAGGTCGACGTGCTG 1970 ||| |||||||||| |||||| || ||||| || || |||| | |||||||| | | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1971 ATCTTCGATGAGGCGCAGATCCTCACGGAGAACGCGATGGACGACATGGTTCCCGCGACC 2030 |||||||||||||||||||||| || ||||| ||| |||| |||||||| | ||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 2031 AAC--GCCTCGCCTAA-------CGCGCTGATCCTGCTCGCCGGTACGCCGCCGAAGCCG 2081 ||| | |||| | || ||||||| | | || || ||||| ||| | || Sbjct 6478 AACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCCCCCGCGGGCG 6419 Query 2082 AACGATCCCGGCGAGGTGT 2100 | ||||| ||||||| || Sbjct 6418 ACTGATCCTGGCGAGGAGT 6400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195873063235020